View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10555_high_16 (Length: 219)
Name: NF10555_high_16
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 10255203 - 10255003
Alignment:
| Q |
1 |
aaatcatatattttcttgtagtgtaaacaacttgaatacttccctatcaaacatgagcttcactgttcttcgacaaatcaaaattagaataataataacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10255203 |
aaatcatatattttcttgtagtgtaaacatcttgaatacttccctaccaaacatgaacttcactgttcttccacaaatcaaaattagaataataataacc |
10255104 |
T |
|
| Q |
101 |
gtattcaccatgatatgataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10255103 |
ctattcaccatgatatgataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactactt |
10255004 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
10255003 |
t |
10255003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 10244474 - 10244391
Alignment:
| Q |
118 |
ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactacttt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10244474 |
ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactacttt |
10244391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 10252948 - 10252901
Alignment:
| Q |
133 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagt |
180 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
10252948 |
attgagattgactcaagcctcatcatgttgaacaatgtctccactagt |
10252901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 10265569 - 10265514
Alignment:
| Q |
133 |
attgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagt |
188 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
10265569 |
attgagattgactcaagcctcatcatgttaagtaaagtctctcatagttctcaagt |
10265514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 10247966 - 10247930
Alignment:
| Q |
102 |
tattcaccatgatatgataaagcatgttgagattgag |
138 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10247966 |
tattcatcatgataggataaagcatgttgagattgag |
10247930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University