View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10555_low_1 (Length: 648)
Name: NF10555_low_1
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 428 - 640
Target Start/End: Complemental strand, 29906815 - 29906603
Alignment:
| Q |
428 |
aagcctgtaatttccatgttattggtggttcgaagaaatataattttaatggtcattctacctcatttgttggatttaatttgtctttggcttaacagaa |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29906815 |
aagcctgtaatttccatgttattggtggttcgaagaaatataattttaatggtcattctacctcttttgttggatttaatttatctttggcttaacagaa |
29906716 |
T |
|
| Q |
528 |
aacatgattgctatgatggaaaaatattttgaatccaattttattgttggtgatggataactattgctataagatatacacgttttcattcacatcattg |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906715 |
aacatgattgctatgatggaaaaatattttgaatccaattttattgtcggtgatggataactattgctataagatatacacgttttcattcacatcattg |
29906616 |
T |
|
| Q |
628 |
tcaatggtctctg |
640 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29906615 |
tcaatggtatctg |
29906603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 29907195 - 29906985
Alignment:
| Q |
18 |
atacttaatccagtcatccacattttactgtgatgattgaattttttaagcaacttcttttcttgacaggagcataactaatgcatttcactataaataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29907195 |
atacttaatccagtcatccacattttgctgtgatgattgaattttttaagcaacttctgtttttgacaggagcataactaatgcatttcactataaataa |
29907096 |
T |
|
| Q |
118 |
gaggtgcaatacaaagtggtacatagctgtaagttagagagctagcttggcataatattttttagttctatgaggaacaccatctgttttgccttagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29907095 |
gaggtgcaatacaaagtggtacatagctgtaagttaaagagctagcttggcataatattttttagttctacgaggaacaccatctgttttgcctcagaaa |
29906996 |
T |
|
| Q |
218 |
aactctaccac |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
29906995 |
aactctaccac |
29906985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 29906975 - 29906907
Alignment:
| Q |
268 |
gattcaaaaaccaaattatcaacttaaatattgtccaagttatcaaaaacaatttgagtcctgttcgaa |
336 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29906975 |
gattcaaaaaccaaatcatcaacataaatatcgtccaagttatcaaaaacaatttgagtcctgttcgaa |
29906907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University