View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10555_low_12 (Length: 251)
Name: NF10555_low_12
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 5747561 - 5747787
Alignment:
| Q |
8 |
gagatgaatgagatggtgtgcatgcatatgtggtatttgaaacccaaattgaatttcttataaaaatgatgattcaatatgtccaaaagattattgttac |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5747561 |
gagatgaatgagatggtgtgcatacatatgtggtatttgaaacccaaattgaatttcttataaaaatgatgattcaatatgtccaaaagattattgttac |
5747660 |
T |
|
| Q |
108 |
tcacgtagacattgcaataattgatacacacacacaatattgacacaaattatcatacttagcatacttacacaatcaataaactcattttagaaaaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5747661 |
tcacgtagacattgcaataattgatacacacacacaatattgacacaaattatcatacttagcatacttacacaatcaat-aactcattttagaaaaaat |
5747759 |
T |
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| Q |
208 |
aataaatcaatctaacagttgaatcatc |
235 |
Q |
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|
|||||||||||||||||||||||||||| |
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| T |
5747760 |
aataaatcaatctaacagttgaatcatc |
5747787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 5752179 - 5752233
Alignment:
| Q |
83 |
aatatgtccaaaagattattgttactcacgtagacattgcaataattgatacaca |
137 |
Q |
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||||||||||||||||||| ||||||| ||| |||| |||||||||||||||| |
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| T |
5752179 |
aatatgtccaaaagattatcgttactcttgtatacatcacaataattgatacaca |
5752233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 5752090 - 5752150
Alignment:
| Q |
7 |
agagatgaatgagatggtgtgcatgcatatgtggtatttgaaacccaaattgaatttctta |
67 |
Q |
| |
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|||||||||||||||||| ||||| || || ||| ||| |||||||||||||||||||| |
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|
| T |
5752090 |
agagatgaatgagatggtttgcataaatgtgcggtcttttcaacccaaattgaatttctta |
5752150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 5752277 - 5752352
Alignment:
| Q |
158 |
tatcatacttagcatacttacacaatcaataaactcattttagaaaaaataataaatcaatctaacagttgaatcat |
234 |
Q |
| |
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||||| ||||| ||||||||||| ||||||| ||| || ||||| || ||||||||||||| || ||||||||||| |
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| T |
5752277 |
tatcagacttatcatacttacactttcaataa-ctctttctagaagaagtaataaatcaatccaatagttgaatcat |
5752352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 18677599 - 18677825
Alignment:
| Q |
8 |
gagatgaatgagatggtgtgcatgcatatgtggtatttgaaacccaaattgaatttcttataaaaatgatgattcaatatgtccaaaagattattgttac |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18677599 |
gagatgaatgagatggtgtgcatacatatgtggtatttgaaacccaaattgaatttcttataaaaatgatgattcaatatgtccaaaagattattgttac |
18677698 |
T |
|
| Q |
108 |
tcacgtagacattgcaataattgatacacacacacaatattgacacaaattatcatacttagcatacttacacaatcaataaactcattttagaaaaaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18677699 |
tcacgtagacattgcaataattgatacacacacacaatattgacacaaattatcatacttagcatacttacacaatcaat-aactcattttagaaaaaat |
18677797 |
T |
|
| Q |
208 |
aataaatcaatctaacagttgaatcatc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
18677798 |
aataaatcaatctaacagttgaatcatc |
18677825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 18682217 - 18682271
Alignment:
| Q |
83 |
aatatgtccaaaagattattgttactcacgtagacattgcaataattgatacaca |
137 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||| |||||||||||||||| |
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|
| T |
18682217 |
aatatgtccaaaagattatcgttactcttgtatacatcacaataattgatacaca |
18682271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 18682128 - 18682188
Alignment:
| Q |
7 |
agagatgaatgagatggtgtgcatgcatatgtggtatttgaaacccaaattgaatttctta |
67 |
Q |
| |
|
|||||||||||||||||| ||||| || || ||| ||| |||||||||||||||||||| |
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|
| T |
18682128 |
agagatgaatgagatggtttgcataaatgtgcggtcttttcaacccaaattgaatttctta |
18682188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 18682315 - 18682390
Alignment:
| Q |
158 |
tatcatacttagcatacttacacaatcaataaactcattttagaaaaaataataaatcaatctaacagttgaatcat |
234 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| ||| || ||||| || ||||||||||||| || ||||||||||| |
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|
| T |
18682315 |
tatcagacttatcatacttacactttcaataa-ctctttctagaagaagtaataaatcaatccaatagttgaatcat |
18682390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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