View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_15 (Length: 249)
Name: NF10555_low_15
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30506205 - 30505963
Alignment:
| Q |
1 |
tacttgagcattgctagacctatgttcgttcctttgatcaaatgatatgaaatttgaatgataatattcaacaaatgatccattagtactatttttacca |
100 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506205 |
tacttgagcattgctagacctatgttggttcccttgatcaaatgatatgaaatttgaatgataatattcaacaaatgatccattagtactatttttacca |
30506106 |
T |
|
| Q |
101 |
ttcattacctcattcccactttgacccttcatagtttttccaagaatagagtctttcataatcaatgaattaccaccacactgtcttggttgagtttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30506105 |
ttcattacctcattcccactttgacccttcatagtttttccaagaatagagtctttcataatcaatgaattaccaccacactgtcttggttgagtttgat |
30506006 |
T |
|
| Q |
201 |
agaaaactttggacacaactaacactccttctttctctgcttc |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30506005 |
agaaaactttggacacaactaacactccttctttctcttcttc |
30505963 |
T |
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