View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_16 (Length: 240)
Name: NF10555_low_16
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 3225306 - 3225084
Alignment:
| Q |
18 |
attagattgaaccaagaattgatggtttcttctgacaaaacaattgatggtcgtggagctaatgttcaaattagggatggtgctggaattacaatgcaat |
117 |
Q |
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| T |
3225306 |
attagattgaaccaagaattgatggtttcttctgacaaaacaattgatggtcgtggagctaatgttcaaattagggatggtgctggaattacaatgcaat |
3225207 |
T |
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| Q |
118 |
ttgttaataatgttattattcatggacttcatattcaagatattaaagctaaaccaggtggtttgattagggattcttttgaccatactggacaaagaac |
217 |
Q |
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| T |
3225206 |
ttgttaataatgttatcattcatggacttcatattcaaaatattaaagctaaaccaggtggtttgattagggattcttttgaccatactggacaaagaac |
3225107 |
T |
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| Q |
218 |
aagaagtgatggtgatgctatct |
240 |
Q |
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| T |
3225106 |
aagaagtgatggtgatgctatct |
3225084 |
T |
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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 2045174 - 2045384
Alignment:
| Q |
30 |
caagaattgatggtttcttctgacaaaacaattgatggtcgtggagctaatgttcaaattagggatggtgctggaattacaatgcaatttgttaataatg |
129 |
Q |
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| T |
2045174 |
caagagttaatggtttcatccgacaagaccatcgacggtcgtggagccaatgtgcaaattagggaaggtgctggaattaccatgcaattcgtcaacaatg |
2045273 |
T |
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| Q |
130 |
ttattattcatggacttcatattcaag-atattaaagctaaaccaggtggtttgattagggattcttttgaccatactggacaaagaacaagaagtgatg |
228 |
Q |
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| T |
2045274 |
tcatcattcacggtcttcgca-tcaagaacattaaagctaagaatggtggtttgattagagactctttcgatcatctcggagtaagaacaaggagtgatg |
2045372 |
T |
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| Q |
229 |
gtgatgctatct |
240 |
Q |
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| T |
2045373 |
gtgatgctatct |
2045384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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