View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_19 (Length: 225)
Name: NF10555_low_19
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9399108 - 9398911
Alignment:
| Q |
16 |
caggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9399108 |
caggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgt |
9399009 |
T |
|
| Q |
116 |
agtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacaggttc |
213 |
Q |
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| T |
9399008 |
agtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttc |
9398911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 9381683 - 9381492
Alignment:
| Q |
16 |
caggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
9381683 |
caggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaacccttcattattacaaaaagctcgtgaagaaatagacaatat |
9381584 |
T |
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| Q |
116 |
agtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccac |
207 |
Q |
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| T |
9381583 |
agtagggaaaaatagactagtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccac |
9381492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 23244286 - 23244478
Alignment:
| Q |
16 |
caggaacagacacaacatcaatttcaacagaatgggcattagttgagctaat-gaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatg |
114 |
Q |
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|||||||||| |||||| |||| |||||||||||||||||||| || || || || ||||| || || | |||||||||||||||||||| ||||| |
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| T |
23244286 |
caggaacagatacaacagcaatatcaacagaatgggcattagtagaactcataaaaaaacccatctttactccaaaaagctcgtgaagaaatcgacaaca |
23244385 |
T |
|
| Q |
115 |
tagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccac |
207 |
Q |
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||||||| ||||||||| ||| || ||||| ||| ||||| | || ||| | ||||| || |||| ||||||||||||||| ||||||| |
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| T |
23244386 |
tagtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagagaaacatttcgtcttcacccac |
23244478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 23223371 - 23223331
Alignment:
| Q |
153 |
ccaaatcttccttatattcaagccataataaaagaaacatt |
193 |
Q |
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||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
23223371 |
ccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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