View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10555_low_2 (Length: 442)

Name: NF10555_low_2
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10555_low_2
NF10555_low_2
[»] scaffold0003 (2 HSPs)
scaffold0003 (17-129)||(34641-34753)
scaffold0003 (17-129)||(41308-41423)
[»] chr2 (3 HSPs)
chr2 (149-298)||(923592-923737)
chr2 (17-129)||(14455449-14455561)
chr2 (369-431)||(22996457-22996517)
[»] chr3 (1 HSPs)
chr3 (83-298)||(46833160-46833357)
[»] chr6 (1 HSPs)
chr6 (17-129)||(27445935-27446050)
[»] chr8 (1 HSPs)
chr8 (141-298)||(27540883-27541035)
[»] chr7 (1 HSPs)
chr7 (242-301)||(45032127-45032186)
[»] chr5 (1 HSPs)
chr5 (242-303)||(4357204-4357264)


Alignment Details
Target: scaffold0003 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 34753 - 34641
Alignment:
Q  17 aaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagctt 116  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||   |    
T  34753 aaaaatatataattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgctttgctgtcaaagtttataaatgaaatct 34654  T
Q  117 ataagtggtcata 129  Q
    ||| |||||||||    
T  34653 atatgtggtcata 34641  T

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Target: scaffold0003; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 41423 - 41308
Alignment:
Q  17 aaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaag 113  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||     
T  41423 aaaaaaatataattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaa 41324  T
Q  114 cttataagtggtcata 129  Q
      |||| |||||||||    
T  41323 tctatatgtggtcata 41308  T

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Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 923592 - 923737
Alignment:
Q  149 tatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgnnnnnnnagatttcttta 248  Q
    ||||||||||| ||||||   |||||||||||||||||||||||||||||||||||| |||| ||  |||||||||||||||       |||||||||||    
T  923592 tatgtttcaatcactatt---ttaaagtgtgtctctaatcatatgtttttcttcttt-aagagtttggattgaaaaatggtgtctttttagatttcttta 923687  T
Q  249 agagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgca 298  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  923688 agagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgca 923737  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 14455561 - 14455449
Alignment:
Q  17 aaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatatatgaacatgctttgctgtcaaagtttataaatgaagctt 116  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||   |    
T  14455561 aaaaatataaaattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatatgaccatgcttttctgtcaaagtttataaatgaaatct 14455462  T
Q  117 ataagtggtcata 129  Q
    ||| |||||||||    
T  14455461 atatgtggtcata 14455449  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 22996457 - 22996517
Alignment:
Q  369 aataagttatttggatttattcattattaataacttacacatcaacagttagctctatttcat 431  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||    
T  22996457 aataagttatttggatttattcattattaataactt--acatcaatagatagctctatttcat 22996517  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 83 - 298
Target Start/End: Complemental strand, 46833357 - 46833160
Alignment:
Q  83 catgctttgctgtcaaagtttataaatgaagcttataagtggtcataaaactaatgtatcaattactatgtttcaataactattaatttaaagtgtgtct 182  Q
    |||| ||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||    |||| ||||||  ||||||    
T  46833357 catgtttttctgtaaaagtttataaatgaagcctatatgtggtcataaaactaatgtatcaataactatgtttcaat---cattattttaaa--gtgtct 46833263  T
Q  183 ctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgnnnnnnnagatttctttaagagtttagatagaaaaatggtgtcttcttagag 282  Q
    |||||||| ||||||||||| ||||||| || |||||| |||||||||           |  ||| |||||||||||| |||||||||||||| ||||||    
T  46833262 ctaatcatgtgtttttcttc-tttaagagtttcgattg-aaaatggtg-----------tctttttagagtttagataaaaaaatggtgtctttttagag 46833176  T

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Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 27445935 - 27446050
Alignment:
Q  17 aaaaatatataattctgcacatgtatgtcactttgtgtagctgaaaccattttcattatata---tgaacatgctttgctgtcaaagtttataaatgaag 113  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    || ||||||||||||||||||||||||||||||     
T  27445935 aaaaaaatataattatgcacatgtatgtcactttgtgtagctaaaaccattttcattatatacgtcgaccatgctttgctgtcaaagtttataaatgaaa 27446034  T
Q  114 cttataagtggtcata 129  Q
      |||| |||||||||    
T  27446035 tctatatgtggtcata 27446050  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 298
Target Start/End: Complemental strand, 27541035 - 27540883
Alignment:
Q  141 tcaattactatgtttcaataactattaatttaaagtgtgtctctaatcatatgtttttcttcttttaagatttccgattgaaaaatggtgnnnnnnnaga 240  Q
    ||||||||||||||||||| ||||   ||||||||| ||||| ||||||| |||||||||||||| |||| ||  ||||||||||| |||       | |    
T  27541035 tcaattactatgtttcaatcacta---atttaaagtatgtctttaatcatgtgtttttcttcttt-aagaattttgattgaaaaatagtgtcgttttata 27540940  T
Q  241 tttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgca 298  Q
     |||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||    
T  27540939 gttctttaagagtttagatagaaaaatggtgtctt-ttatagcttataaatgaatgca 27540883  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 45032127 - 45032186
Alignment:
Q  242 ttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgcaact 301  Q
    |||||||||||| ||||||| ||||| ||||||| | |||||||| ||||| ||||||||    
T  45032127 ttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaact 45032186  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 4357204 - 4357264
Alignment:
Q  242 ttctttaagagtttagatagaaaaatggtgtcttcttagagtttagaaatgaatgcaactga 303  Q
    ||||||||||||||||||| |||||  ||||||| | ||||||| |||||||||||| ||||    
T  4357204 ttctttaagagtttagatataaaaaatgtgtctt-taagagtttggaaatgaatgcagctga 4357264  T

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