View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_4 (Length: 411)
Name: NF10555_low_4
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 39130770 - 39130385
Alignment:
| Q |
15 |
aaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatcaaatttacttggctttgactcaagactcttcatgcatccctcaaactgct |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130770 |
aaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatgaaatttacttggctttgactcaagactcttcatgcatccctcaaactgct |
39130671 |
T |
|
| Q |
115 |
tctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130670 |
tctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaa |
39130571 |
T |
|
| Q |
215 |
atcatccatttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaaattccttc |
314 |
Q |
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| T |
39130570 |
accatccatttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaaattccttc |
39130471 |
T |
|
| Q |
315 |
tctattgattgaatctccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatttcttctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39130470 |
tctattgattgaatctccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatttcttctt |
39130385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 39426491 - 39426874
Alignment:
| Q |
15 |
aaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatcaaatttacttggctttgactcaagactcttcatgcatccctcaaactgct |
114 |
Q |
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|||| ||||||||||||||||||||| |||||||||| | | | ||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
39426491 |
aaagcatcatattgtttctctcttaactcaggccgctccagctgtccatcaaattcacttggctttgactcaagaccctccatgcgtccctcaaactgct |
39426590 |
T |
|
| Q |
115 |
tctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaa |
214 |
Q |
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||||||||||||| || |||||| ||||||||||| |||||||||||||| || | ||||||||| ||||| |||||||| | |||||||||| || |
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| T |
39426591 |
tctcttttggcttgagctccttctcgtgtactttgaagttcttgtcttctgattcagtctctttcccctgtccttcaaattgtatttcttctgaataaaa |
39426690 |
T |
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| Q |
215 |
atcatccatttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaaattccttc |
314 |
Q |
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||| |||||||||||| ||||||||||||| ||||||||||||| ||||| || ||||||| |||| | | |||||||| ||||||||||| |||||| | |
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| T |
39426691 |
atcctccatttggcttgcaaaacgcttgagttcctgcattcgagctttgagtttctcctctctggacttaagttcctttcctcggtcttcatattcctcc |
39426790 |
T |
|
| Q |
315 |
tctattgattgaatctccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatttcttc |
398 |
Q |
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| |||||||||||||||||||| |||| | ||||| ||||||| ||||||||||| |||||||||| ||||||| |||| |||| |
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| T |
39426791 |
tttattgattgaatctccttcatttggccctcaagtaacttttcttttgactggagctccttcaattgtccttcaaattgcttc |
39426874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 39494370 - 39494661
Alignment:
| Q |
15 |
aaagaatcatattgtttctctcttaagtcaggccgcttcggttttccatcaaatttacttggctttgactcaagactcttcatgcatccctcaaactgct |
114 |
Q |
| |
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|||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||| || |||||||| ||| |||||||||| |
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| T |
39494370 |
aaagcatcatattttttctctcttaactcaggccgcttcagttttccatcaaatttacatggcattgactcaaaacccttcatgcgtccgtcaaactgct |
39494469 |
T |
|
| Q |
115 |
tctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaattgaa |
214 |
Q |
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||||||||||||| || ||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| |
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| T |
39494470 |
tctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctcttccgatttgaa |
39494569 |
T |
|
| Q |
215 |
atcatccatttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaa |
306 |
Q |
| |
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||| ||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39494570 |
atcctccatttggcttacaaaacccttgagattctgcattcgagctttgaattcctcctctttggattcaaattcctttactcggtcttcaa |
39494661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 110 - 314
Target Start/End: Complemental strand, 39143725 - 39143521
Alignment:
| Q |
110 |
ctgcttctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtttctcttctgaa |
209 |
Q |
| |
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||||||||||||||| || || ||||| || ||||||||| |||| || | ||||| ||||||||||||||||| |||| |||||||||||||| |
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| T |
39143725 |
ctgcttctcttttggattgagcaccttcgcatctactttgaacatcttatcgtttgacttgagctctttccctcgtccttcaaaatgtttctcttctgat |
39143626 |
T |
|
| Q |
210 |
ttgaaatcatccatttggcttacaaaacgcttgagctcctgcattcgagttttgaattcctcctctttggattcatgttcctttactcggtcttcaaatt |
309 |
Q |
| |
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|| ||||| ||||||||||||||||||| |||||||| |||| |||||| |||||| | |||||||| |||||| ||||||| ||||| | ||||| | |
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| T |
39143625 |
ttcaaatcttccatttggcttacaaaacccttgagcttctgctttcgagcattgaatccatcctcttttgattcaaattcctttcctcggccgtcaaact |
39143526 |
T |
|
| Q |
310 |
ccttc |
314 |
Q |
| |
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||||| |
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| T |
39143525 |
ccttc |
39143521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 39124712 - 39124557
Alignment:
| Q |
99 |
catccctcaaactgcttctcttttggcttaagatccttcaaatgtactttgaatttcttgtcttctgactctggctctttccctcgtcctgcaaattgtt |
198 |
Q |
| |
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||||| ||||||||||||||| |||||| ||| ||||| |||||||||||| | ||| ||||||||||| ||||||||| ||||||| | ||||||| |
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| T |
39124712 |
catccatcaaactgcttctctattggctcaagctccttagcatgtactttgaactccttctcttctgactcgagctctttccatcgtccttctaattgtt |
39124613 |
T |
|
| Q |
199 |
tctcttctgaattgaaatcatccatttggcttacaaaacgcttgagctcctgcatt |
254 |
Q |
| |
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||| |||||| || |||| ||||||||||||||||||||||| || ||||||||| |
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| T |
39124612 |
tctgttctgatttaaaattctccatttggcttacaaaacgcttcaggtcctgcatt |
39124557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 39494643 - 39494706
Alignment:
| Q |
330 |
tccttcacttggtcttcaagcaacttttgttttgactggaactccttcaatcgtccttcgaatt |
393 |
Q |
| |
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||||| ||| |||||||||||| ||||| ||||| |||||||||||||||| |||||| ||||| |
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| T |
39494643 |
tcctttactcggtcttcaagcagcttttcttttgtctggaactccttcaattgtcctttgaatt |
39494706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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