View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_6 (Length: 341)
Name: NF10555_low_6
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 40207813 - 40208136
Alignment:
| Q |
7 |
aacaagtcacttgtaaaattgttactttacatgagccaaattaacnnnnnnn-tcaagggaaatcgttaattaacaaatcacagatgaatattgttagaa |
105 |
Q |
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| T |
40207813 |
aacaagtcacttgtaaaattgttactttagatgagccaaattaaccaaaaaaatcaaggtaaatcgttaattaacaaatcaaagatgaatattgttagaa |
40207912 |
T |
|
| Q |
106 |
ttagttggaataacatttaaggttgtcactataaagtgtatatcatatacactttccgactaaataactaacttgtaactaccttaaacaacattcaacg |
205 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207913 |
ttagttggaatatcgtttaaggttgtcactataaagtgtatatcata--cactttccgactaaataactaacttgtaactaccttaaacaacattcaacg |
40208010 |
T |
|
| Q |
206 |
aaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208011 |
aaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaa |
40208110 |
T |
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| Q |
306 |
caccatcacattctgtgttacctttg |
331 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40208111 |
caccatcacattctgtgttacctttg |
40208136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 21793305 - 21793213
Alignment:
| Q |
223 |
tagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcaca |
315 |
Q |
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| T |
21793305 |
tagcataccagagataccggcggtgcagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcaca |
21793213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 4483487 - 4483527
Alignment:
| Q |
266 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
306 |
Q |
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| T |
4483487 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
4483527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 31460746 - 31460812
Alignment:
| Q |
228 |
taccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcc |
294 |
Q |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattcc |
31460812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
263 |
aagatcataccaccaaaagcccaagcaattcc |
294 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 2622075 - 2622039
Alignment:
| Q |
168 |
aataactaacttgtaactaccttaaacaacattcaac |
204 |
Q |
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||||||||||| ||||||||||||||||| ||||||| |
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| T |
2622075 |
aataactaactcgtaactaccttaaacaatattcaac |
2622039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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