View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10555_low_7 (Length: 324)

Name: NF10555_low_7
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10555_low_7
NF10555_low_7
[»] chr1 (3 HSPs)
chr1 (174-232)||(32726189-32726247)
chr1 (22-76)||(4198463-4198517)
chr1 (22-76)||(36565621-36565675)
[»] chr5 (1 HSPs)
chr5 (22-88)||(4428721-4428787)
[»] chr8 (2 HSPs)
chr8 (11-83)||(39580626-39580698)
chr8 (11-85)||(19922269-19922343)
[»] chr7 (2 HSPs)
chr7 (22-85)||(49016855-49016918)
chr7 (174-236)||(42934631-42934693)
[»] scaffold0293 (1 HSPs)
scaffold0293 (11-89)||(1020-1097)
[»] chr6 (4 HSPs)
chr6 (22-88)||(34884349-34884415)
chr6 (10-79)||(32218125-32218194)
chr6 (22-85)||(19292696-19292759)
chr6 (53-89)||(19078760-19078796)
[»] chr4 (7 HSPs)
chr4 (11-77)||(16207249-16207315)
chr4 (174-236)||(47680244-47680306)
chr4 (11-72)||(42841733-42841794)
chr4 (11-83)||(22910813-22910885)
chr4 (11-83)||(22967637-22967709)
chr4 (11-77)||(19090484-19090550)
chr4 (11-55)||(3463802-3463846)
[»] chr3 (3 HSPs)
chr3 (11-77)||(8541335-8541401)
chr3 (11-85)||(50769988-50770062)
chr3 (11-83)||(27813708-27813780)
[»] chr2 (2 HSPs)
chr2 (11-85)||(26823095-26823169)
chr2 (174-236)||(39244579-39244641)
[»] scaffold0037 (1 HSPs)
scaffold0037 (24-89)||(38638-38702)


Alignment Details
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 32726189 - 32726247
Alignment:
Q  174 gagccacgtttggctatccgtgggcttgtgcccccactaatttttgaaggttccttcat 232  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  32726189 gagccacgtttggcaatctgtgggcttgtgcccccactaatttttgaaggtttcttcat 32726247  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 4198517 - 4198463
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtgg 76  Q
    ||||||||| ||||||||||||||| ||   ||||||||| ||||||||||||||    
T  4198517 gaatatatattaaacagttttaaaaaatgtacaatattgttaactggtgtggtgg 4198463  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 36565621 - 36565675
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtgg 76  Q
    ||||||||| |||||||||| |||| ||  |||||||||| ||||||||||||||    
T  36565621 gaatatatattaaacagtttcaaaaaatgttcaatattgttaactggtgtggtgg 36565675  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 4428721 - 4428787
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttcttg 88  Q
    ||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||| |||| ||||    
T  4428721 gaatatatattaaacagttttaaaaaatattcaatattgttaactggtgtggtggtaaaattgcttg 4428787  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 39580626 - 39580698
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatt 83  Q
    ||||| |||| |||||||||||||| ||||| ||||  ||  |||||||||||||||||||| ||||||||||    
T  39580626 aaatatttgtagaatatatactaaaaagtttcaaaaattatccaatattgtaaactggtgtgatggtacaatt 39580698  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 19922269 - 19922343
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttc 85  Q
    ||||| |||| ||||||||||||||  |||| |||| |||  ||| |||||||||||||||| ||||||||||||    
T  19922269 aaatatttgtagaatatatactaaaacgtttcaaaaaatatacaaaattgtaaactggtgtgatggtacaatttc 19922343  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 49016855 - 49016918
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttc 85  Q
    ||||||||||||||  |||| ||||||||  |||||||||||| ||||||| ||||||||||||    
T  49016855 gaatatatactaaaacgtttcaaaatatatacaatattgtaaattggtgtgatggtacaatttc 49016918  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 42934631 - 42934693
Alignment:
Q  174 gagccacgtttggctatccgtgggcttgtgcccccactaatttttgaaggttccttcatgcat 236  Q
    ||||||||||| || ||  |||||||||||||||| ||||||| ||||| || ||||||||||    
T  42934631 gagccacgtttagcaatgtgtgggcttgtgccccccctaatttgtgaagatttcttcatgcat 42934693  T

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Target: scaffold0293 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 1097 - 1020
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttcttga 89  Q
    |||||||| ||||||||||| |||| ||||| ||||| |||||||||||||||| || | || |||||||||| |||||    
T  1097 aaataattatggaatatatattaaatagtttcaaaat-taatcaatattgtaaattgatatgttggtacaattgcttga 1020  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 34884349 - 34884415
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttcttg 88  Q
    ||||||||| |||||||||| |||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  34884349 gaatatatattaaacagtttcaaaaaatgttcaatattgttaactggtgtggtggtaaaattgcttg 34884415  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 32218125 - 32218194
Alignment:
Q  10 taaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtac 79  Q
    |||||| |||||||||||||| ||||| ||||  ||| |||  |||| ||||||||||||||||||||||    
T  32218125 taaatatttgtggaatatatattaaactgtttcgaaaaatatacaatgttgtaaactggtgtggtggtac 32218194  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 19292696 - 19292759
Alignment:
Q  22 gaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttc 85  Q
    ||||||||||||||  |||| ||||  |||||||||||| ||| ||||||| ||||||||||||    
T  19292696 gaatatatactaaaacgtttcaaaaattaatcaatattgcaaattggtgtgatggtacaatttc 19292759  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 19078760 - 19078796
Alignment:
Q  53 caatattgtaaactggtgtggtggtacaatttcttga 89  Q
    |||||||||||||| |||||||||||||||| |||||    
T  19078760 caatattgtaaactagtgtggtggtacaattgcttga 19078796  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 16207315 - 16207249
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggt 77  Q
    ||||| |||||||||||||| ||||  |||| |||| |||  |||||||||||||||||||||||||    
T  16207315 aaatatttgtggaatatatattaaaatgtttcaaaaaatatacaatattgtaaactggtgtggtggt 16207249  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 47680306 - 47680244
Alignment:
Q  174 gagccacgtttggctatccgtgggcttgtgcccccactaatttttgaaggttccttcatgcat 236  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||| || |||| |||||    
T  47680306 gagccacgtttggcaatttctgggcttgtgcccccactaatttttgaagatttcttcgtgcat 47680244  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 42841733 - 42841794
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtg 72  Q
    ||||| |||| |||||||||||||| ||||| |||| |||  ||||||||||||||||||||    
T  42841733 aaatatttgtagaatatatactaaaaagtttaaaaagatatacaatattgtaaactggtgtg 42841794  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 22910813 - 22910885
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatt 83  Q
    ||||| |||| |||||||||||||| ||||| |||| |||  |||||||||||| |||||||  |||||||||    
T  22910813 aaatatttgtagaatatatactaaaaagtttcaaaaaatatacaatattgtaaattggtgtgagggtacaatt 22910885  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 22967709 - 22967637
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatt 83  Q
    ||||| |||| |||||||||||||| ||||| |||| |||  |||||||||||| |||||||  |||||||||    
T  22967709 aaatatttgtagaatatatactaaaaagtttcaaaaaatatacaatattgtaaattggtgtgagggtacaatt 22967637  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 19090484 - 19090550
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggt 77  Q
    ||||| |||||||||| ||||||||||||||||||  |  ||||||||  | |||||||||||||||    
T  19090484 aaatatttgtggaataaatactaaacagttttaaacaaatatcaatataatgaactggtgtggtggt 19090550  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 3463846 - 3463802
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaa 55  Q
    ||||| |||||||||||||| ||||||||||||| |||| |||||    
T  3463846 aaatatttgtggaatatatattaaacagttttaagatattatcaa 3463802  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 8541401 - 8541335
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggt 77  Q
    ||||| |||||||||||||| ||||| ||||||||  | |  |||||||||||||||||||||||||    
T  8541401 aaatatttgtggaatatatattaaaccgttttaaacaacatacaatattgtaaactggtgtggtggt 8541335  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 50769988 - 50770062
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttc 85  Q
    ||||| |||| ||||||||| ||||  ||||||||| |||   ||||||||||||||||||| ||||||||||||    
T  50769988 aaatatttgtagaatatatagtaaaacgttttaaaaaatatataatattgtaaactggtgtgatggtacaatttc 50770062  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 27813780 - 27813708
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatt 83  Q
    ||||| |||| |||||||||||||| ||||| |||| |||   ||||||||||||||||||| || |||||||    
T  27813780 aaatatttgtagaatatatactaaaaagtttcaaaagatatataatattgtaaactggtgtgatgatacaatt 27813708  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 26823169 - 26823095
Alignment:
Q  11 aaataattgtggaatatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttc 85  Q
    ||||| |||| ||||||||| ||||  ||||||||| |||   ||||||||||||||||||| ||||||||||||    
T  26823169 aaatatttgtagaatatatagtaaaacgttttaaaaaatatataatattgtaaactggtgtgatggtacaatttc 26823095  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 39244579 - 39244641
Alignment:
Q  174 gagccacgtttggctatccgtgggcttgtgcccccactaatttttgaaggttccttcatgcat 236  Q
    |||||||||||||| ||| ||| ||||||||||||||||| |||| ||||||  |||||||||    
T  39244579 gagccacgtttggcaatctgtgagcttgtgcccccactaaattttaaaggttttttcatgcat 39244641  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 38702 - 38638
Alignment:
Q  24 atatatactaaacagttttaaaatataatcaatattgtaaactggtgtggtggtacaatttcttga 89  Q
    ||||||| |||| ||||| ||||| |||||||||||||||| |||| || |||||||||| |||||    
T  38702 atatatattaaatagtttcaaaat-taatcaatattgtaaattggtatgttggtacaattgcttga 38638  T

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