View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10555_low_8 (Length: 317)
Name: NF10555_low_8
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 107 - 303
Target Start/End: Original strand, 41074283 - 41074479
Alignment:
| Q |
107 |
aaggttgtaacataatgagggtattatgtcatactggaaattgttggtttataatttttgttacaggatttgcatttgtgtgtaaattacatacagctgc |
206 |
Q |
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| T |
41074283 |
aaggttgtaacataatgagggtattatgtcatactggaaattgttggtttataatttttgttataggatttgcatttatgtgtaaattacatgcagctgc |
41074382 |
T |
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| Q |
207 |
taacatgtgaaagagattagatctgttttaattttcacaactattgagtagatcttctttttcagatgctataagtatgtctttgaaactcacacta |
303 |
Q |
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| T |
41074383 |
taacatgtgaaagagattagatctgtttcaattttcacaactattgagtagatcttctttttcagatgctataagtatgtctttgaaactcacacta |
41074479 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41074177 - 41074238
Alignment:
| Q |
1 |
aggtagatgcaagaagttaagattaagactaattaatttaagagctaggagattaatgttgc |
62 |
Q |
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| T |
41074177 |
aggtagatgcaagaagttaagattaagactaattaatttaagagctaggagattaatgttgc |
41074238 |
T |
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