View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10555_low_9 (Length: 304)
Name: NF10555_low_9
Description: NF10555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10555_low_9 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 32309243 - 32309532
Alignment:
| Q |
1 |
ttcgttcagtcattttagcagccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32309243 |
ttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
32309342 |
T |
|
| Q |
101 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32309343 |
ccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
32309442 |
T |
|
| Q |
201 |
ttcatccaggtaaataaacttaatcnnnnnnncgttcttctttaattctttattttctgctttgattatatttaatgcataggatagatct |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32309443 |
ttcatccaggtaaataaacttaatctttttta-gttcttctttaattctttattttctgctttgattatatttactgcataggatagatct |
32309532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 32815214 - 32814925
Alignment:
| Q |
1 |
ttcgttcagtcattttagcagccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32815214 |
ttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
32815115 |
T |
|
| Q |
101 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32815114 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
32815015 |
T |
|
| Q |
201 |
ttcatccaggtaaataaacttaatcnnnnnnncgttcttctttaattctttattttctgctttgattatatttaatgcataggatagatct |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
32815014 |
ttcatccaggtaaataaacttaatctttttta-gttcttctttaattctttattttctgctttgattatatttactgcatagcatagatct |
32814925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 32565592 - 32565302
Alignment:
| Q |
1 |
ttcgttcagtcattttagcagccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32565592 |
ttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
32565493 |
T |
|
| Q |
101 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32565492 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgc |
32565393 |
T |
|
| Q |
201 |
ttcatccaggtaaataaacttaatcnnnnnnncgttcttctttaattctttattttctgctttgattatatttaatgcataggatagatct |
291 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32565392 |
ttcatccaggtaaattaacttaatctttttttcattcttctttaattctttattatctgctttgattatatttactgcataggatagatct |
32565302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32806777 - 32806563
Alignment:
| Q |
1 |
ttcgttcagtcattttagcagccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32806777 |
ttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
32806678 |
T |
|
| Q |
101 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32806677 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgc |
32806578 |
T |
|
| Q |
201 |
ttcatccaggtaaat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32806577 |
ttcatccaggtaaat |
32806563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 32799823 - 32799640
Alignment:
| Q |
1 |
ttcgttcagtcattttagcagccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799823 |
ttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttg |
32799724 |
T |
|
| Q |
101 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtct |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799723 |
ccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtct |
32799640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 28215796 - 28215614
Alignment:
| Q |
29 |
ttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttcc |
128 |
Q |
| |
|
|||||| ||| |||||| | |||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
28215796 |
ttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttcc |
28215697 |
T |
|
| Q |
129 |
gctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt |
211 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28215696 |
gctgttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
28215614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 28220448 - 28220607
Alignment:
| Q |
49 |
aaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
28220448 |
aaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttactt |
28220547 |
T |
|
| Q |
149 |
tgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt |
211 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
28220548 |
taatcatagagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggt |
28220607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 32305344 - 32305399
Alignment:
| Q |
170 |
ttctcttcttcgtcttttctttcatgattgcttcatccaggtaaataaacttaatc |
225 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32305344 |
ttctcttcttcgtctcttctttcatgattgcttcatccaggtaaataaacttaatc |
32305399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 28220316 - 28220356
Alignment:
| Q |
29 |
ttttccattttatttcaatcaaagaatcagagatggttcca |
69 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
28220316 |
ttttccgtttgatttcaatcaaagaatcagagatggttcca |
28220356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 301408 - 301602
Alignment:
| Q |
20 |
agccaatacttttccattttatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatatt |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
301408 |
agccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataatttctatagggattctagccctcaagctgaagatatt |
301507 |
T |
|
| Q |
120 |
gttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggtaaa |
214 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
301508 |
gttccttccgctgttaccgatatctaccttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccacgtaaa |
301602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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