View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10556_high_1 (Length: 398)
Name: NF10556_high_1
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10556_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 41558551 - 41558183
Alignment:
| Q |
20 |
agtcataattagctattgaaaatcaatacaagatcaactatactaaaagagtgttagtatccatatgatccatcatgttgcgaaattctgatgactcacc |
119 |
Q |
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| T |
41558551 |
agtcataattagctattgaaaatcaatacaagatcaactatactaaaagagtgttagtatccatatgatccatcatgttgcgaaattctgatgactcacc |
41558452 |
T |
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| Q |
120 |
caaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtttgttctcttgtaaaagcttctgaacaatcaccagaactctcaacatcaca |
219 |
Q |
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| T |
41558451 |
caaaaagacagatggatgcatgtaataaatgtctctttttgaactatgtttgttctcttgtaaaagcttctgaacaatcaccagaactctcaacatcaca |
41558352 |
T |
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| Q |
220 |
tctaaaagcaaaataacnnnnnnnnctcaaaacctagagaacatgaatacaatgagtaaactactaaattagtcccttacttcgtacaccgatttcaaat |
319 |
Q |
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| T |
41558351 |
tctaaaagcaaaataacaaaaaaaactcaaaacctagagaacaggaatacaatgagtaaactactaaattagtcccttacttcgtacaccgatttcaaat |
41558252 |
T |
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| Q |
320 |
aggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctatg |
388 |
Q |
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| T |
41558251 |
aggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctatg |
41558183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 41542409 - 41542268
Alignment:
| Q |
35 |
ttgaaaatcaatacaagatcaactatactaaaagagtgttagtatccatatgatccatcatgttgcgaaattctgatgactcacccaaaaagacagatgg |
134 |
Q |
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| T |
41542409 |
ttgacaatcaatacaagatcaacaatattaaaagagtattgctatccatatgatccatcatgtctcgaaattctgactactcgcctaaaaagacagatgg |
41542310 |
T |
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| Q |
135 |
atgcatgtaataaatgtctctttttgaactatgtttgttctc |
176 |
Q |
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| T |
41542309 |
atgcatgtaataaatgtctctttttgaactatgtttgttctc |
41542268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 28485693 - 28485612
Alignment:
| Q |
271 |
atgagtaaactactaaattagtcccttacttcgtacaccgatttcaaataggtccctgagattatgaatatttcgaaaaggt |
352 |
Q |
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| T |
28485693 |
atgagtaaactaccaaattagtccctgactttgtagggcgcattcaaataagtccctgaaagtatgaatatttcaaaaaggt |
28485612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 28596941 - 28596869
Alignment:
| Q |
315 |
caaataggtccctgagattatgaatatttcgaaaaggtttgttacactattaaactctcaagatgatccctat |
387 |
Q |
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| T |
28596941 |
caaataggtccctgaaataatgaatattttgaaaaggttccggactctattaaactgtcaagttggtccctat |
28596869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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