View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10556_high_3 (Length: 239)
Name: NF10556_high_3
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10556_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 18252896 - 18252675
Alignment:
| Q |
2 |
ccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagt |
101 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18252896 |
ccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagt |
18252797 |
T |
|
| Q |
102 |
cattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18252796 |
cattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagc |
18252697 |
T |
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| Q |
202 |
aagggaaagaagagaaaaaatg |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
18252696 |
aagggaaagaagagaaaaaatg |
18252675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 18256672 - 18256893
Alignment:
| Q |
2 |
ccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagt |
101 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18256672 |
ccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagt |
18256771 |
T |
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| Q |
102 |
cattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18256772 |
cattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctactacggatgcatgagc |
18256871 |
T |
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| Q |
202 |
aagggaaagaagagaaaaaatg |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
18256872 |
aagggaaagaagagaaaaaatg |
18256893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 18245792 - 18245571
Alignment:
| Q |
2 |
ccgtttacaccgggaaattgttcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagt |
101 |
Q |
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||||||| ||| | |||||| |||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||| |
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| T |
18245792 |
ccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccgtggtaggcgaagt |
18245693 |
T |
|
| Q |
102 |
cattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggcgcattgtaatctgctacgcagaaatcgactacggatgcatgagc |
201 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
18245692 |
cattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctactactgatgcatgaga |
18245593 |
T |
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| Q |
202 |
aagggaaagaagagaaaaaatg |
223 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18245592 |
aagggaaagaagagaaaaaatg |
18245571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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