View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10556_low_1 (Length: 446)
Name: NF10556_low_1
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10556_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 41032723 - 41032304
Alignment:
| Q |
17 |
acatatgtgtcagacaccgaacacgcctataatctgaagaagtgtcagtgctacatagaagagacgtaagtacatttttgtgcatcataaaatgttagag |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41032723 |
acatatgtgtcagacaccgaacatgcctataatctgaag---tgtcagtgctacataaaagagacgtaagtacatttttgtgcgtcataaaatgttagag |
41032627 |
T |
|
| Q |
117 |
cttgatttattgccaacttgagatcgatagacgagtcttgatgtttgtgcttttgaggtaaaaagtgcaccagaagagccactgctacgactgcaaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41032626 |
cttgatttattgccaacttgagatcgatagacgagtcttgatgtttatgcttttgaggtaaaaagtgcaccagaagagccactgctacaactgcaaaaaa |
41032527 |
T |
|
| Q |
217 |
tattgctactgtaacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatggactca |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41032526 |
tattgctactataacaaaaataaaaatatggaagtatttcttatcagtgatgaccagattgcagtcaacagattttggatattgggaagggatggactca |
41032427 |
T |
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| Q |
317 |
taagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcgacttgatgaagggagaagtcgacctgcttctgaaactgtatgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41032426 |
taagaagcagaaaactttggagtaaggttgaaatcaagtgctatggcgttccagcggcttgatgaagggagaagtcgacctgcttctgaaactgtatgca |
41032327 |
T |
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| Q |
417 |
tatatcttacaggattcttctct |
439 |
Q |
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||||||||||||||||||||||| |
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| T |
41032326 |
tatatcttacaggattcttctct |
41032304 |
T |
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