View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10556_low_10 (Length: 214)

Name: NF10556_low_10
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10556_low_10
NF10556_low_10
[»] chr3 (8 HSPs)
chr3 (1-214)||(8472200-8472413)
chr3 (1-153)||(6838139-6838291)
chr3 (1-157)||(8568185-8568338)
chr3 (55-153)||(5250862-5250960)
chr3 (176-214)||(6838060-6838098)
chr3 (68-153)||(4388175-4388260)
chr3 (71-141)||(5268765-5268835)
chr3 (55-127)||(6448046-6448118)
[»] chr7 (1 HSPs)
chr7 (1-214)||(6572472-6572688)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8472200 - 8472413
Alignment:
Q  1 tttttgaggattgcaagctaactgcaccttcataactagtgcaacttctttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatc 100  Q
    |||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||| || ||||||| |||||| |||||    
T  8472200 ttttcgaggattgcaggctaactgcaccttcataactagggaaacttctctgtgttaatcccaacacatccttttgatcggcaagaagttttagttcatc 8472299  T
Q  101 tagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtgttgaatcttgctctttcgttgtacatttgtatcaaactcatccaac 200  Q
    |||| ||||  |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  8472300 tagcgaatctctgatcctagattcaaatcgattaatgaaagctgaaaggaagtgttgaaccttgctctttcgttgtacacttgtatcaaactcatccaac 8472399  T
Q  201 aattgatctacttc 214  Q
    ||||||||||||||    
T  8472400 aattgatctacttc 8472413  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6838291 - 6838139
Alignment:
Q  1 tttttgaggattgcaagctaactgcaccttcataactagtgcaacttctttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatc 100  Q
    |||||||||||||   |||||| || ||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||   |    
T  6838291 tttttgaggattgtgggctaaccgcgccttcataactagtgcaacttctttgtgtcaatcccaaatcacccttttgctctgcaagatattttagcttgcc 6838192  T
Q  101 tagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagt 153  Q
    |||||| || |||||||||||||||||  ||||||||| ||||||||| ||||    
T  6838191 tagcaactctttgatcctagattcaaatggattagtgatagctgaaagcaagt 6838139  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 8568338 - 8568185
Alignment:
Q  1 tttttgaggattgcaagctaactgcaccttcataactagtgcaacttctttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctcatc 100  Q
    |||||||||||| ||| ||||| |||||||||   ||||| ||   ||||||  ||||||||| |||||||||||| |  ||||| |||||||||   ||    
T  8568338 tttttgaggatttcaatctaaccgcaccttca---ctagtacaggctctttggttcaatcccagcacatccttttgatgagcaagcaattttagcgtgtc 8568242  T
Q  101 tagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtgttg 157  Q
    || |||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  8568241 taacaaatctttgatcctagattcaaatcgattagtaaaacctgaaaggaagtgttg 8568185  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 5250862 - 5250960
Alignment:
Q  55 tcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagt 153  Q
    ||||||| | || ||||||||||| ||||||||||| |||||  |||||||| || || ||||||||||||||  |||||||||||| ||||| |||||    
T  5250862 tcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagt 5250960  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 6838098 - 6838060
Alignment:
Q  176 tacatttgtatcaaactcatccaacaattgatctacttc 214  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  6838098 tacatttgtatcaatctcatccaacaattgatctacttc 6838060  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 4388260 - 4388175
Alignment:
Q  68 atccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagt 153  Q
    |||||||||||  |||||||||| || ||  |||||||| || |||||||||||||||||  ||||| |||||| ||||| |||||    
T  4388260 atccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagt 4388175  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 5268765 - 5268835
Alignment:
Q  71 cttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaaccgattagtgaaag 141  Q
    |||||| | ||||||||||| |||||  |||||||| || ||||||||||| |||||  ||||||||||||    
T  5268765 cttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaag 5268835  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 6448118 - 6448046
Alignment:
Q  55 tcaatcccaacacatccttttgctctgcaagaaattttagctcatctagcaaatcattgatcctagattcaaa 127  Q
    ||||| ||| |||||||||||||||||||||| | | ||| |  | |||||| || |||||||||||||||||    
T  6448118 tcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaa 6448046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6572688 - 6572472
Alignment:
Q  1 tttttgaggattgcaagctaactgcaccttcataactagtgcaacttc---tttgtgtcaatcccaacacatccttttgctctgcaagaaattttagctc 97  Q
    ||||||||||||||  |||||||||||||||| ||||| |||||||||   |   |||||||||||||||||||||||||||| | ||||||||||| |     
T  6572688 tttttgaggattgctggctaactgcaccttcaaaactactgcaacttccactacctgtcaatcccaacacatccttttgctctacgagaaattttagttt 6572589  T
Q  98 atctagcaaatcattgatcctagattcaaaccgattagtgaaagctgaaaggaagtgttgaatcttgctctttcgttgtacatttgtatcaaactcatcc 197  Q
     || ||||||||||||||||||| |||| | |||||||| |||| |||||||| | |||| | |||| |||||||||||   |||||| ||| |||||||    
T  6572588 gtcgagcaaatcattgatcctaggttcatatcgattagtcaaagttgaaaggatgcgttgcaccttgatctttcgttgtgagtttgtagcaatctcatcc 6572489  T
Q  198 aacaattgatctacttc 214  Q
    |||||||||||||||||    
T  6572488 aacaattgatctacttc 6572472  T

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