View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10556_low_8 (Length: 225)
Name: NF10556_low_8
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10556_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 13650503 - 13650345
Alignment:
| Q |
15 |
cagagagataaatgattataacatattaacatttgcaaattacctctaacaatgtctccttttctagctaataataaataacctatggttattaacactc |
114 |
Q |
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| T |
13650503 |
cagagagaaaaatgattataacatattaacatttgcaaattacctctaacaatgtctccttttctagctaataataaataacctatggttattaacactc |
13650404 |
T |
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| Q |
115 |
cgatcccagagtacagattaaactaaaaaccaaaaatcaaataagaactagaggcatta |
173 |
Q |
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| T |
13650403 |
tgatcccagagtatagattaaactaaaaaccaacaatcaaataagaaccagaggcatta |
13650345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 41884119 - 41884030
Alignment:
| Q |
19 |
gagataaatgattataacatattaacattt--gcaaattacctctaacaatgtctccttttctagctaataataaataacctatggttat |
106 |
Q |
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| T |
41884119 |
gagaaaaaagattatgacatattaacatttttgcaaattatttctaacgatgtctttttatctacctaataataaataacctatggttat |
41884030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 41883890 - 41883814
Alignment:
| Q |
120 |
ccagagtacagattaaactaaaaa-ccaaaaatcaaataagaactagaggcattaattctactcaattaacaacaat |
195 |
Q |
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| T |
41883890 |
ccagagtatagatcaaactaaaaaaccgacaatctaatacgaactagaggcattagttctattcaattaacaacaat |
41883814 |
T |
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