View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10556_low_9 (Length: 222)
Name: NF10556_low_9
Description: NF10556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10556_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 14575282 - 14575097
Alignment:
| Q |
18 |
tttagttgttctatgaagatgttccctttttattannnnnnngtaatctggttacgcgctcgtacgcgggtttcttgggttgcgttaatcagagaacttt |
117 |
Q |
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| T |
14575282 |
tttagttgttctatgaagatgttcccttttcatt-tttttttgtaatctggtttcgcgctcgtacgcgggtttcttgggttgcgttgatcagagaacttt |
14575184 |
T |
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| Q |
118 |
tgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcccttttgggttttcctgggtcatgtcctacgtcc |
204 |
Q |
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| T |
14575183 |
tgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcccttttgggttttcctgggtcaggtcctatgtcc |
14575097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 18003892 - 18003970
Alignment:
| Q |
115 |
ttttgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcccttttgggtt-ttcctgggtca |
192 |
Q |
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| T |
18003892 |
ttttgttaggatagattagagttgatctacctggactgatttatcatgttgtattcccgtttgggttattcctgggtca |
18003970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 9848301 - 9848448
Alignment:
| Q |
60 |
gtaatctggttacgcgctcgtacgcgggtttcttgggttgcgt---taatcagagaacttttgttaagatagattagagtagatctattaaggctgtttt |
156 |
Q |
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| T |
9848301 |
gtaatatggtttcgcgctcgtacgcgtgtttgctgggttgcgtctttgatcagtggacttttgttaagatagattagagtagatctattaagactgtttt |
9848400 |
T |
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| Q |
157 |
gtcatgttgtattcccttttgggttttcctgggtcatgtcctacgtcc |
204 |
Q |
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| T |
9848401 |
gtcatgttgtattcccttttgggtttttctgggtcaggtcctacgtcc |
9848448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 54272200 - 54272293
Alignment:
| Q |
111 |
gaacttttgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcccttttgggttttcctgggtcatgtcctacgtcc |
204 |
Q |
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| T |
54272200 |
gaacttttgttaagatagattatagtagatctattaagtctgttttgtcatattgtattcccttttggattttcctgggtcaggtcctacgtcc |
54272293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 23777291 - 23777368
Alignment:
| Q |
115 |
ttttgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcccttttgggttttcctgggtca |
192 |
Q |
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| T |
23777291 |
ttttgtttggatagattagagtagatctatctaggctgttttatcatgatgtatttccgtttgagctttcctgagtca |
23777368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 31727478 - 31727418
Alignment:
| Q |
111 |
gaacttttgttaagatagattagagtagatctattaaggctgttttgtcatgttgtattcc |
171 |
Q |
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| T |
31727478 |
gaacttttgttaggatagattagagtagacccatttaggttgatttatcaagttgtattcc |
31727418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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