View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10557_low_1 (Length: 607)
Name: NF10557_low_1
Description: NF10557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10557_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 34 - 592
Target Start/End: Complemental strand, 4165668 - 4165114
Alignment:
| Q |
34 |
ggaaccgaaatgaagttggtgaggacattttctatgtactatgatgtgttggtggtggctctatacgagtccaaagggtttatatattattgctatacct |
133 |
Q |
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| T |
4165668 |
ggaaccgaaatgaagttggtgaggacattttctatgtactatgatgtgt----ggtggctctatacgagtctaaagggtttatatattattgctatacct |
4165573 |
T |
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| Q |
134 |
ccatccttataggtaggatggcataatggcattgaccaaataaattttacattaaatgtgccgataataatgtgtaatatacatcaatccaaaaatatat |
233 |
Q |
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| T |
4165572 |
ccatccttataggtaggatggcataatggcattgaccaaataatttttacattaaatgtgccaataataatgtgtaatatacatcaatccaaaaatatat |
4165473 |
T |
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| Q |
234 |
gtcgatttttagtacaatgcacataggctagatggatggaaggagggacacataggggttgtggcccttccttccctcatgagtgggttgaatatgtcaa |
333 |
Q |
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| T |
4165472 |
gtcgatttttagtacaatgcacataggctagatggatggaaggagggacacata-gggttgtggcccttccttccctcatgagtgggttgaatatgtcaa |
4165374 |
T |
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| Q |
334 |
tttgttattccaagtaatctgttatgctcagaatactcatcatttataaagttacaacttttaagtttaatccctacacaaattttgtctaaaattggtc |
433 |
Q |
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| T |
4165373 |
tttgttattccaagtaatctgttatgttcagaatactcaccatttataaagttacaacttttaagtttaatccccacacaaattttgtctaaaattggtc |
4165274 |
T |
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| Q |
434 |
cttattttgcatttacagggactaaatactatgactaagaatactcaccatttgt-ataataaaaaattagaaagtagagactaagattggagaaaattt |
532 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |
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| T |
4165273 |
cttattttgcatttacagggactaaatactatgactaagaatactcaccatttgtaaaaaaaaaaaattagaaagtagagactaagattggagaaaattt |
4165174 |
T |
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| Q |
533 |
atatagggactaaatataaatattcataatttcataaggacaaaaaattcatattgtttt |
592 |
Q |
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| T |
4165173 |
atatagggactaaatataaatattcataatttcataaggacaaaaaatttatattgtttt |
4165114 |
T |
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