View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10557_low_12 (Length: 237)

Name: NF10557_low_12
Description: NF10557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10557_low_12
NF10557_low_12
[»] scaffold0004 (1 HSPs)
scaffold0004 (40-154)||(35693-35809)
[»] chr5 (6 HSPs)
chr5 (40-154)||(40941507-40941623)
chr5 (40-154)||(34113884-34114000)
chr5 (40-154)||(34091750-34091869)
chr5 (47-151)||(31204988-31205091)
chr5 (98-154)||(37369319-37369374)
chr5 (98-154)||(41992709-41992764)
[»] chr3 (7 HSPs)
chr3 (40-151)||(9689037-9689150)
chr3 (40-154)||(37494512-37494628)
chr3 (40-154)||(26569754-26569870)
chr3 (46-154)||(11992930-11993040)
chr3 (98-154)||(39759757-39759812)
chr3 (98-154)||(43823145-43823200)
chr3 (98-154)||(53286069-53286124)
[»] chr2 (9 HSPs)
chr2 (40-154)||(29395501-29395617)
chr2 (40-154)||(18025742-18025858)
chr2 (46-151)||(3216607-3216714)
chr2 (46-154)||(6892815-6892925)
chr2 (40-154)||(25342158-25342271)
chr2 (82-154)||(3221528-3221602)
chr2 (40-95)||(25345495-25345550)
chr2 (98-154)||(33458045-33458100)
chr2 (98-152)||(34478619-34478672)
[»] chr8 (5 HSPs)
chr8 (40-154)||(23003963-23004079)
chr8 (46-154)||(1089844-1089953)
chr8 (41-151)||(18952529-18952641)
chr8 (98-154)||(38567740-38567795)
chr8 (67-151)||(18964829-18964916)
[»] chr6 (5 HSPs)
chr6 (40-154)||(8366055-8366171)
chr6 (40-154)||(20771812-20771928)
chr6 (150-184)||(20771996-20772030)
chr6 (98-154)||(3288171-3288226)
chr6 (98-154)||(11843630-11843685)
[»] chr7 (8 HSPs)
chr7 (40-154)||(31379977-31380095)
chr7 (40-154)||(46841858-46841974)
chr7 (98-154)||(11591847-11591902)
chr7 (98-154)||(37068427-37068482)
chr7 (98-154)||(43614163-43614218)
chr7 (98-154)||(46066867-46066922)
chr7 (98-154)||(33516113-33516168)
chr7 (98-154)||(48827207-48827262)
[»] chr4 (13 HSPs)
chr4 (40-154)||(46203735-46203851)
chr4 (40-154)||(56290460-56290576)
chr4 (98-154)||(11945190-11945245)
chr4 (98-154)||(41055148-41055203)
chr4 (98-154)||(55682410-55682465)
chr4 (107-154)||(11945100-11945146)
chr4 (101-154)||(48236487-48236539)
chr4 (98-154)||(374621-374676)
chr4 (98-154)||(2469355-2469410)
chr4 (98-150)||(7199633-7199684)
chr4 (98-154)||(37517129-37517184)
chr4 (98-154)||(37521345-37521400)
chr4 (98-154)||(44420664-44420719)
[»] scaffold0311 (2 HSPs)
scaffold0311 (41-154)||(1334-1448)
scaffold0311 (141-183)||(1511-1553)
[»] chr1 (4 HSPs)
chr1 (98-154)||(8114513-8114568)
chr1 (98-154)||(20993655-20993710)
chr1 (98-154)||(52004507-52004562)
chr1 (98-154)||(52539694-52539749)


Alignment Details
Target: scaffold0004 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 35809 - 35693
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  35809 caataacttgtactagttgtatataattggtattagcgattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 35710  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  35709 gtttaaggtattttagt 35693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 40941623 - 40941507
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||  ||| |||| |||||||    
T  40941623 caataacttgtactagttgtatataattggtattagcgatttttgattttgctatcccttttatttcatattatgaatacttaatgaaattttgagtaat 40941524  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  40941523 gtttaaggtattttagt 40941507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 34113884 - 34114000
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||| |||  |||||||||||||||||| || ||| |||| |||||||    
T  34113884 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacatcatgaaattttgagtaat 34113983  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  34113984 gtttaaggtattttagt 34114000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 34091869 - 34091750
Alignment:
Q  40 caatagcttgtactagttgtatgtaat---tggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtg-atatttagag 133  Q
    ||||| |||||||||||||||| ||||   |||||||||| ||||| |||||||||||  || ||||||||||||||||||||||| || | ||||| ||    
T  34091869 caataacttgtactagttgtatataataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaacattta-ag 34091771  T
Q  134 taatgtttaaggtattttagt 154  Q
    |||||||||||||||||||||    
T  34091770 taatgtttaaggtattttagt 34091750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 31205091 - 31204988
Alignment:
Q  47 ttgtactagttgtatgtaattggtattagcgatttttgattttgctatc--tcttatttcatattatgaatacttcgtgatatttagagtaatgtttaag 144  Q
    ||||||||||||||| ||||||||||| || |||||  |||||||||||  | ||||||||   |||||||||||| ||| |||| ||||||| ||||||    
T  31205091 ttgtactagttgtatataattggtattggctattttcaattttgctatcctttttatttca---tatgaatacttcatgaaattttgagtaatatttaag 31204995  T
Q  145 gtatttt 151  Q
    |||||||    
T  31204994 gtatttt 31204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 37369374 - 37369319
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| |||  |||| |||||||||||||||||||||||    
T  37369374 ttatttcaaattaggaatacttcatgaatttta-agtaatgtttaaggtattttagt 37369319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 41992709 - 41992764
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  41992709 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggaattttagt 41992764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 9689150 - 9689037
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||| ||| |||| |||||||    
T  9689150 caataacttgtactagttgtatataattggtattagccatttttgattttgctattccttttatttcatattatgaatacttcatgaaattttgagtaat 9689051  T
Q  138 gtttaaggtatttt 151  Q
    | ||||||||||||    
T  9689050 gattaaggtatttt 9689037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 37494628 - 37494512
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  37494628 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 37494529  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  37494528 gtttaaggtattttagt 37494512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 26569754 - 26569870
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||| ||||||| ||||||||||| || ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  26569754 caataacttgtactggttgtatataattggtattggctattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 26569853  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  26569854 gtttaaggtattttagt 26569870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 11993040 - 11992930
Alignment:
Q  46 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctc--ttatttcatattatgaatacttcgtgatatttagagtaatgtttaa 143  Q
    ||||||||| |||||| | |||| ||||||||||||| |||||||||||| |  |||||||||||||||||||||||  || |||| |||||||||||||    
T  11993040 cttgtactaattgtatatgattgttattagcgattttcgattttgctatcccatttatttcatattatgaatacttcaagaaattttgagtaatgtttaa 11992941  T
Q  144 ggtattttagt 154  Q
    |||||||||||    
T  11992940 ggtattttagt 11992930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 39759757 - 39759812
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  39759757 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 39759812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 43823200 - 43823145
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  43823200 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 43823145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 53286124 - 53286069
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  53286124 ttatttcaaattaagaatacttaatga-attttgagtaatgtttaaggtattttagt 53286069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 29395617 - 29395501
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||| |||  ||||||||||||||||||||| ||| |||| |||||||    
T  29395617 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat 29395518  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  29395517 gtttaaggtattttagt 29395501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 18025858 - 18025742
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||| ||| |||  |||||||||||| |||||||| ||| |||| |||||||    
T  18025858 caataacttgtactagttgtatataattggtattagccattttcgattttgcaatcccttttatttcatattataaatacttcatgaaattttgagtaat 18025759  T
Q  138 gtttaaggtattttagt 154  Q
    | |||||||||||||||    
T  18025758 gcttaaggtattttagt 18025742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 3216607 - 3216714
Alignment:
Q  46 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaa 143  Q
    |||||||||||||||| |||||  ||||||||||| | |||||||||||| |||  ||||||||||||||||||||| ||| | || |||||||||||||    
T  3216607 cttgtactagttgtatataattcttattagcgattatcgattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaa 3216706  T
Q  144 ggtatttt 151  Q
    ||||||||    
T  3216707 ggtatttt 3216714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 6892815 - 6892925
Alignment:
Q  46 cttgtactagttgtatgtaattggtattagcgatttttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaa 143  Q
    |||||||||||||||| ||| | |||||||| |||||  ||||||||||| |||  ||||||||| ||||||||||| ||| |||| |||||||||||||    
T  6892815 cttgtactagttgtatataactagtattagccattttcaattttgctatcccttttatttcatatgatgaatacttcatgaaattttgagtaatgtttaa 6892914  T
Q  144 ggtattttagt 154  Q
    |||||||||||    
T  6892915 ggtattttagt 6892925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 25342271 - 25342158
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| ||||||||||||   ||||| |||||||||||  || |||||||||||||||||||   | ||| |||| |||||||    
T  25342271 caataacttgtactagttgtatataattggtattattcattttcgattttgctatcccttttatttcatattatgaata---catgaaattttgagtaat 25342175  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  25342174 gtttaaggtattttagt 25342158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 3221602 - 3221528
Alignment:
Q  82 ttgattttgctatctctt--atttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||||||||| |||  ||||||||||||||||||||| ||| | || ||||||||||||||||||||||||    
T  3221602 ttgattttgctatcccttttatttcatattatgaatacttcatgaaactttgagtaatgtttaaggtattttagt 3221528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 25345495 - 25345550
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatc 95  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  25345495 caataacttgtactagttgtatataattggtattagccattttcgattttgctatc 25345550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 33458100 - 33458045
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  33458100 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 33458045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 34478672 - 34478619
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtatttta 152  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  34478672 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtatttta 34478619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 23003963 - 23004079
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||| ||||||||| ||| |||| || ||||    
T  23003963 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattacgaatacttcatgaaattttgactaat 23004062  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  23004063 gtttaaggtattttagt 23004079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 1089844 - 1089953
Alignment:
Q  46 cttgtactagttgtatgtaattggtattagcgatttttgattttgctat-ctcttatttcatattatgaatacttcgtgatatttagagtaatgtttaag 144  Q
    |||||||||||||||| ||||||||||| |||||||||  ||||||||| ||  |||||||| |||||||||||||  || |||| |||||| |||||||    
T  1089844 cttgtactagttgtatataattggtatttgcgattttttcttttgctatccttctatttcatgttatgaatacttcaagaaattttgagtaaagtttaag 1089943  T
Q  145 gtattttagt 154  Q
    ||||||||||    
T  1089944 gtattttagt 1089953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 151
Target Start/End: Original strand, 18952529 - 18952641
Alignment:
Q  41 aatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatc--tcttatttcatattatgaatacttcgtgatatttagagtaatg 138  Q
    |||| |||||||||||||| | ||| |||||||||| ||||| ||||||||||||  | ||||||||||||||||||  ||  ||| |||| ||||||||    
T  18952529 aataacttgtactagttgtgtataactggtattagcaattttcgattttgctatcttttttatttcatattatgaatgttttatgaaatttggagtaatg 18952628  T
Q  139 tttaaggtatttt 151  Q
    ||| |||||||||    
T  18952629 ttttaggtatttt 18952641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 38567740 - 38567795
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  38567740 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 38567795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 18964916 - 18964829
Alignment:
Q  67 tggtattagcgatttttgattttgctatctctt---atttcatattatgaatacttcgtgatatttagagtaatgtttaaggtatttt 151  Q
    ||||||||||||||||  ||||||||| || ||   |||||||||||||| || ||  ||| |||| |||||||||| ||||||||||    
T  18964916 tggtattagcgattttctattttgctaactttttttatttcatattatgattattttatgaaatttggagtaatgttgaaggtatttt 18964829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 8366171 - 8366055
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||  || |||||||||||||||||||| || ||| | ||  ||||||    
T  8366171 caataacttgtactagttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacatcatgaaaatttaagtaat 8366072  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  8366071 gtttaaggtattttagt 8366055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 20771812 - 20771928
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||||||| ||||| ||| |||| ||||||     
T  20771812 caataacttgtactggttgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaaaacttcatgaaattttgagtaac 20771911  T
Q  138 gtttaaggtattttagt 154  Q
     ||||||||||||||||    
T  20771912 atttaaggtattttagt 20771928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 20771996 - 20772030
Alignment:
Q  150 ttagtggccgcaccaccgaaatagcacccgctacg 184  Q
    ||||||||||||||||||||||||||| |||||||    
T  20771996 ttagtggccgcaccaccgaaatagcacacgctacg 20772030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 3288226 - 3288171
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| |||||||||||||||||| |||||    
T  3288226 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtatcttagt 3288171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 11843630 - 11843685
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  11843630 ttatttcaaattaagaatacttaatga-attttgagtaatgtttaaggtattttagt 11843685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 31379977 - 31380095
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttc--atattatgaatacttcgtgatatttagagta 135  Q
    ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||  || |||||||  |||||||||||||||| ||| |||| |||||    
T  31379977 caataacttgtactagttgtatataattggtattagccatttttgattttgctatcccttttatttcatatattatgaatacttcatgaaattttgagta 31380076  T
Q  136 atgtttaaggtattttagt 154  Q
    ||||| || ||||||||||    
T  31380077 atgttaaatgtattttagt 31380095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 46841858 - 46841974
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctatctct--tatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| || ||| ||||||| ||||  |||||||||||| ||  |||||||||||| ||||||||| ||| |||| |||||||    
T  46841858 caataacttgtactagttgtatatagttgatattagctatttccgattttgctatccctattatttcatattacgaatacttcatgaaattttgagtaat 46841957  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  46841958 gtttaaggtattttagt 46841974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 11591847 - 11591902
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  11591847 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 11591902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 37068427 - 37068482
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||||||||||||| |||| ||| || |||||||||||||||||||||    
T  37068427 ttatttcaaattatgaatacttcatgattttt-gattaatgtttaaggtattttagt 37068482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 43614163 - 43614218
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  43614163 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 43614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 46066922 - 46066867
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  46066922 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 46066867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 33516168 - 33516113
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| |||| |||||||||||||||||||    
T  33516168 ttatttcaaattaggaatacttcatga-attttgagtgatgtttaaggtattttagt 33516113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 48827207 - 48827262
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||  ||| |||| ||||||||||||||||||||||||    
T  48827207 ttatttcaaattaggaatacttaatga-attttgagtaatgtttaaggtattttagt 48827262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 46203735 - 46203851
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| ||||||| |||||||| |||||||||||||| ||||| |||||||||||  || ||||||||||| ||||||||||| ||  |||| ||||||     
T  46203735 caataacttgtacaagttgtatataattggtattagccattttcgattttgctatcccttttatttcatatgatgaatacttcatgtaattttgagtaac 46203834  T
Q  138 gtttaaggtattttagt 154  Q
    ||||||| |||||||||    
T  46203835 gtttaagttattttagt 46203851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 56290460 - 56290576
Alignment:
Q  40 caatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaat 137  Q
    ||||| |||||||||||||||| |||||||||||||| ||||| |||||| ||||  || |||||||||||||| |||| ||| ||| | || |||| ||    
T  56290460 caataacttgtactagttgtatataattggtattagccattttcgatttttctatcccttttatttcatattataaatatttcttgaaactttgagtcat 56290559  T
Q  138 gtttaaggtattttagt 154  Q
    |||||||||||||||||    
T  56290560 gtttaaggtattttagt 56290576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 11945245 - 11945190
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||  |||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  11945245 ttatttcgaattatgaatacttcatga-attttgagtaatgtttaaggtattttagt 11945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 41055203 - 41055148
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  41055203 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 41055148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 55682410 - 55682465
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  55682410 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 55682465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 11945146 - 11945100
Alignment:
Q  107 attatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  11945146 attatgaatacttcatga-attttgagtaatgtttaaggtattttagt 11945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 48236487 - 48236539
Alignment:
Q  101 tttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    ||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  48236487 tttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 48236539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 374676 - 374621
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  374676 ttatttcaaattaagaatacttcatga-attttgagtaatgtttaaggaattttagt 374621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 2469355 - 2469410
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| |||||||||||||| |||||||||    
T  2469355 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaagatattttagt 2469410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 7199633 - 7199684
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattt 150  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||||||||    
T  7199633 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggtattt 7199684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 37517184 - 37517129
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||| | |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  37517184 ttattttaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 37517129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 37521400 - 37521345
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||| | |||| ||||||||| ||| |||| ||||||||||||||||||||||||    
T  37521400 ttattttaaattaggaatacttcatga-attttgagtaatgtttaaggtattttagt 37521345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 44420719 - 44420664
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||||||||||||| | | |||| ||||||| ||||||||||||||||    
T  44420719 ttatttcaaattatgaatacttcataa-attttgagtaatatttaaggtattttagt 44420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 1334 - 1448
Alignment:
Q  41 aatagcttgtactagttgtatgtaattggtattagcgatttttgattttgctat--ctcttatttcatattatgaatacttcgtgatatttagagtaatg 138  Q
    |||| ||||||||  |||||| |||||||||||||| ||||| |||||||||||  || ||||||||||||||||||||||| ||| |||| |||||||     
T  1334 aataacttgtactcattgtatataattggtattagccattttcgattttgctatcccttttatttcatattatgaatacttcatgaaattttgagtaat- 1432  T
Q  139 tttaaggtattttagt 154  Q
     |||||||||||||||    
T  1433 attaaggtattttagt 1448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 1511 - 1553
Alignment:
Q  141 taaggtattttagtggccgcaccaccgaaatagcacccgctac 183  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  1511 taaggtattttagtggctgcaccaccgaaatagcgcccgctac 1553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 8114513 - 8114568
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||| | |||||||||||||| | | |||| ||||||||||||||||||||||||    
T  8114513 ttattttaaattatgaatacttcataa-attttgagtaatgtttaaggtattttagt 8114568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 20993710 - 20993655
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| || | ||||||||| ||| |||| ||||||||||||||||||||||||    
T  20993710 ttatttcaaataaggaatacttcatga-attttgagtaatgtttaaggtattttagt 20993655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 52004562 - 52004507
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| || | ||||||||||||||||||||||||    
T  52004562 ttatttcaaattaggaatacttcatga-atcttgagtaatgtttaaggtattttagt 52004507  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 52539694 - 52539749
Alignment:
Q  98 ttatttcatattatgaatacttcgtgatatttagagtaatgtttaaggtattttagt 154  Q
    |||||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||    
T  52539694 ttatttcaaattaggaatacttcatga-attttgagtaatgtttaaggaattttagt 52539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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