View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10557_low_2 (Length: 451)
Name: NF10557_low_2
Description: NF10557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10557_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 5295056 - 5294778
Alignment:
| Q |
19 |
taattatcattcatagaaa-ccccattgcatttctgatctaacacctaaaccatattgacttatatcaaaccatacctgcctaaatactttgattatgag |
117 |
Q |
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| T |
5295056 |
taattatcattcatagaaaaccccattgcatttctgatctaacacctaaaccatattgacttatatcaaaccatacctgcctaaatactttgattatgag |
5294957 |
T |
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| Q |
118 |
atcatgatactcatcagcattcaaagtcaaataacatgccaacaactcttccatttcttctgccttactaatctgtttctcttcaatcatctcaatcatt |
217 |
Q |
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| T |
5294956 |
atcatgatactcatcagcattcaaagtcaaataacatgccaacaactcttccatttcttctgccttactaatctgtttctcttcaatcatctcaatcatt |
5294857 |
T |
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| Q |
218 |
gaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatctaattctggtttagtactaataa |
296 |
Q |
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| T |
5294856 |
gaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatctaattctggtttagtactaataa |
5294778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 5294695 - 5294621
Alignment:
| Q |
367 |
gcttatttcaacctttgaaaccaatcttggtgaatatattttcaccctcgaaactttctttggtttcctcctttg |
441 |
Q |
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| T |
5294695 |
gcttatttcaacctttgaaaccaatcttggtgaatatattttcaccctcgaaactttctttggtttcctcctttg |
5294621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 86 - 276
Target Start/End: Complemental strand, 36171070 - 36170880
Alignment:
| Q |
86 |
aaccatacctgcctaaatactttgattatgagatcatgatactcatcagcattcaaagtcaaataacatgccaacaactcttccatttcttctgccttac |
185 |
Q |
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||||||||||| | ||| ||||||| |||| |||||| | |||| | ||||||| |||||||||| || || ||||||||||||||||||| || || |
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| T |
36171070 |
aaccatacctgtcgaaacgctttgataatgatatcatggaattcattggaattcaaactcaaataacacgctaataactcttccatttcttctggctgac |
36170971 |
T |
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| Q |
186 |
taatctgtttctcttcaatcatctcaatcattgaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatctaa |
276 |
Q |
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| T |
36170970 |
tgatatgtttctctttgatcatctcaatcattgaatctctaaaatcttgttgtggatccaaagaacacttgacaacagcaaaactatctaa |
36170880 |
T |
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