View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10557_low_3 (Length: 402)

Name: NF10557_low_3
Description: NF10557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10557_low_3
NF10557_low_3
[»] chr3 (7 HSPs)
chr3 (52-386)||(10544296-10544630)
chr3 (114-264)||(37193286-37193436)
chr3 (119-185)||(19585643-19585709)
chr3 (113-185)||(12297676-12297748)
chr3 (128-174)||(44667453-44667499)
chr3 (10-41)||(10544249-10544280)
chr3 (119-175)||(18433130-18433186)
[»] chr6 (6 HSPs)
chr6 (114-264)||(34825006-34825156)
chr6 (114-264)||(33460849-33460999)
chr6 (113-175)||(21752792-21752854)
chr6 (113-175)||(33580680-33580742)
chr6 (135-165)||(6343502-6343532)
chr6 (119-168)||(26134600-26134649)
[»] chr8 (4 HSPs)
chr8 (114-291)||(2997712-2997889)
chr8 (117-180)||(20077753-20077816)
chr8 (119-182)||(25574806-25574869)
chr8 (128-180)||(18551539-18551591)
[»] scaffold0329 (1 HSPs)
scaffold0329 (119-185)||(12291-12357)
[»] chr1 (3 HSPs)
chr1 (119-185)||(52778962-52779028)
chr1 (117-180)||(14456838-14456901)
chr1 (118-166)||(9796045-9796093)
[»] chr5 (7 HSPs)
chr5 (116-185)||(17387965-17388034)
chr5 (75-168)||(9845911-9846004)
chr5 (125-183)||(15449982-15450040)
chr5 (135-165)||(16989791-16989821)
chr5 (131-168)||(23954103-23954140)
chr5 (119-175)||(31327667-31327723)
chr5 (119-175)||(31376334-31376390)
[»] chr4 (4 HSPs)
chr4 (116-185)||(22644641-22644710)
chr4 (125-166)||(14040099-14040140)
chr4 (124-166)||(8122137-8122179)
chr4 (124-162)||(19803306-19803344)
[»] chr2 (7 HSPs)
chr2 (119-182)||(18498778-18498841)
chr2 (119-182)||(26360449-26360512)
chr2 (116-185)||(29500650-29500719)
chr2 (135-165)||(20482626-20482656)
chr2 (135-165)||(28018531-28018561)
chr2 (119-175)||(30154844-30154900)
chr2 (123-171)||(37177582-37177630)
[»] scaffold1416 (1 HSPs)
scaffold1416 (135-165)||(199-229)
[»] chr7 (1 HSPs)
chr7 (119-168)||(16257678-16257727)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 52 - 386
Target Start/End: Original strand, 10544296 - 10544630
Alignment:
Q  52 cagtttttctcttgttgcaaagttaaccacaatcagaattctattggctcttgcatccacccaaaactggcatttacatcaattagatgtaaacaatgct 151  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10544296 cagtttttctcctgttgcaaagttaaccacaatcagaattctattggctcttgcattcacccaaaactggcatttatatcaattagatgtaaacaatgct 10544395  T
Q  152 ttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgctccaaacactgttagcaaattacagaagggtctctatg 251  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10544396 ttccttcatggagatttgcaagaaaatgtatacaagagtatccctgatagtgttgatagtgctccaaacactgttagcaaattacagaagagtctctatg 10544495  T
Q  252 gtttgaagcaagccggtcgcgagtggtatgagaaattgacttcactattacttagtgaaggatacacacagtcaaattctaattactccctcttcatcaa 351  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  10544496 gtttgaagcaagccactcgcaagtggtatgagaaattgacttcactattacttagtgaagaatacacacagtcaaattctgattactccctcttcatcaa 10544595  T
Q  352 tgcacatggttctgatttcacacctttgttggtgt 386  Q
    |||||||||||||||||||||| ||||||||||||    
T  10544596 tgcacatggttctgatttcacaactttgttggtgt 10544630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 37193286 - 37193436
Alignment:
Q  114 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 213  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  37193286 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 37193385  T
Q  214 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 264  Q
     |||||||  ||| |||||||||| ||| | || |||||||||||||||||    
T  37193386 accaaacaaggtttgcaaattacataagagcctatatggtttgaagcaagc 37193436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 19585709 - 19585643
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||    
T  19585709 tggcatttacatcaacttgatgtaaacaatgctttccttcatggagatttacaagaagatgtttata 19585643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 12297676 - 12297748
Alignment:
Q  113 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    ||||| ||||||||||||||| | ||||||| ||||||||| |||||||||||||| |||||| |||| ||||    
T  12297676 caaaattggcatttacatcaacttgatgtaagcaatgcttttcttcatggagatttacaagaagatgtttata 12297748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 44667499 - 44667453
Alignment:
Q  128 catcaattagatgtaaacaatgctttccttcatggagatttgcaaga 174  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||    
T  44667499 catcaattagatgttaaaaatgctttccttcatggagaattgcaaga 44667453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 10544249 - 10544280
Alignment:
Q  10 gcaaagggatataatcaagttgaaggtcttga 41  Q
    ||||||||||||||||||||||||||||||||    
T  10544249 gcaaagggatataatcaagttgaaggtcttga 10544280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 18433186 - 18433130
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||||||||||||||||||||||| ||||| ||  | |||||||| || ||||||    
T  18433186 tggcatttacatcaattagatgtaaataatgcgtttttgcatggagaattacaagaa 18433130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 34825006 - 34825156
Alignment:
Q  114 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 213  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  34825006 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 34825105  T
Q  214 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 264  Q
     |||||||  ||| |||||||||| ||| | || |||||||||||||||||    
T  34825106 accaaacaaggtttgcaaattacataagagcctatatggtttgaagcaagc 34825156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 33460849 - 33460999
Alignment:
Q  114 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 213  Q
    ||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||||| ||||| || | || ||| || || |||||   ||||||    
T  33460849 aaaactggcatttacatcagttggatgtaaataatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtgtctctagtgc 33460948  T
Q  214 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagc 264  Q
     |||||||  |||  ||| ||||| ||| | ||||||||||||||||||||    
T  33460949 accaaacaaggttttcaagttacataagagcctctatggtttgaagcaagc 33460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 21752854 - 21752792
Alignment:
Q  113 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||||||||||||||||||||||||||| ||||||| ||  | ||||| |||||| |||||    
T  21752854 caaaactggcatttacatcaattagatgtacacaatgcatttttgcatggtgatttggaagaa 21752792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 33580680 - 33580742
Alignment:
Q  113 caaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||||||||||||||||||||||||||| ||||||| ||  | ||||| |||||| |||||    
T  33580680 caaaactggcatttacatcaattagatgtacacaatgcatttttgcatggtgatttggaagaa 33580742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 6343502 - 6343532
Alignment:
Q  135 tagatgtaaacaatgctttccttcatggaga 165  Q
    |||||||||||||||||||||||||||||||    
T  6343502 tagatgtaaacaatgctttccttcatggaga 6343532  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 26134600 - 26134649
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 168  Q
    |||||| |||| ||||||||||| ||||||||||| || |||||||||||    
T  26134600 tggcatctacaccaattagatgtgaacaatgcttttctccatggagattt 26134649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 291
Target Start/End: Original strand, 2997712 - 2997889
Alignment:
Q  114 aaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatataggagtatccctgatggtgttgatagtgc 213  Q
    ||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||| ||||| || | || ||| || || ||| |   ||||||    
T  2997712 aaaactggcatttacatcagttggatgtaaacaatgcttttctacatggtgatttgcaagagaatgtttacatgaatataccagaaggtatctctagtgc 2997811  T
Q  214 tccaaacactgttagcaaattacagaagggtctctatggtttgaagcaagccggtcgcgagtggtatgagaaattgac 291  Q
     |||||||  ||| |||| ||||| ||| | || |||||||||||||||||| || |  | ||||||||||| |||||    
T  2997812 accaaacaaggtttgcaagttacataagagcctatatggtttgaagcaagccagtaggaaatggtatgagaagttgac 2997889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 20077753 - 20077816
Alignment:
Q  117 actggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 180  Q
    |||||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||| ||||    
T  20077753 actggcatttacatcagttagatgtaaacaatgcatttcttcatgaagatttgcaggaagatgt 20077816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 25574869 - 25574806
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 182  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  25574869 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 25574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 18551591 - 18551539
Alignment:
Q  128 catcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 180  Q
    |||||| | ||||| || ||||||||||||||||| || ||||||||||||||    
T  18551591 catcaacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgt 18551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 12291 - 12357
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| |||| ||||    
T  12291 tggcatttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttata 12357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 52778962 - 52779028
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||| |||| ||||    
T  52778962 tggcatttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttata 52779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 14456838 - 14456901
Alignment:
Q  117 actggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgt 180  Q
    ||||||||||||||||  | ||||||||||||||||| || ||||||||  |||||||| ||||    
T  14456838 actggcatttacatcagcttgatgtaaacaatgcttttctccatggagaactgcaagaagatgt 14456901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 9796093 - 9796045
Alignment:
Q  118 ctggcatttacatcaattagatgtaaacaatgctttccttcatggagat 166  Q
    |||| |||||||||||||||||||||| | ||||||| | |||||||||    
T  9796093 ctggaatttacatcaattagatgtaaatattgctttcttacatggagat 9796045  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 17387965 - 17388034
Alignment:
Q  116 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    |||||| |||||||||||||||||||||||||||| ||  | ||||||||| | |||||| |||||||||    
T  17387965 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatata 17388034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 9846004 - 9845911
Alignment:
Q  75 taaccacaatcagaattctattggctcttgcatccacccaaaactggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 168  Q
    |||||||||||||| |  | |||||||| || |||| | | || |||||| ||||||||||||||||||| ||||| || || |||||||||||    
T  9846004 taaccacaatcagattaattttggctctagcttccatcaataattggcatctacatcaattagatgtaaataatgcctttctgcatggagattt 9845911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 15449982 - 15450040
Alignment:
Q  125 ttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtata 183  Q
    ||||||||| | ||||| |||||||||||||||||||| ||| |||||||  |||||||    
T  15449982 ttacatcaacttgatgtgaacaatgctttccttcatggtgatctgcaagaggatgtata 15450040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 16989821 - 16989791
Alignment:
Q  135 tagatgtaaacaatgctttccttcatggaga 165  Q
    |||||||||||||||||||||||||||||||    
T  16989821 tagatgtaaacaatgctttccttcatggaga 16989791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 23954140 - 23954103
Alignment:
Q  131 caattagatgtaaacaatgctttccttcatggagattt 168  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  23954140 caattagatgttaacaatgctttccttcatggtgattt 23954103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 31327723 - 31327667
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||| | |||||| | |||||||||||||| || ||||||||||| |||||||||    
T  31327723 tggcatatgcatcaacttgatgtaaacaatgcatttcttcatggagaattgcaagaa 31327667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 31376390 - 31376334
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||| | |||||| | |||||||||||||| || ||||||||||| |||||||||    
T  31376390 tggcatatgcatcaacttgatgtaaacaatgcatttcttcatggagaattgcaagaa 31376334  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 22644641 - 22644710
Alignment:
Q  116 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    ||||||||||||||||| |||||||| || ||||||||||| |||||||| || |||||| |||| ||||    
T  22644641 aactggcatttacatcagttagatgtcaataatgctttcctccatggagaattacaagaagatgtctata 22644710  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 14040099 - 14040140
Alignment:
Q  125 ttacatcaattagatgtaaacaatgctttccttcatggagat 166  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  14040099 ttacatcaattagatgtaaacaatgcatttcttcatggagat 14040140  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 8122179 - 8122137
Alignment:
Q  124 tttacatcaattagatgtaaacaatgctttccttcatggagat 166  Q
    |||||||||||| |||||||||||||| || ||||||||||||    
T  8122179 tttacatcaattggatgtaaacaatgcctttcttcatggagat 8122137  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 19803344 - 19803306
Alignment:
Q  124 tttacatcaattagatgtaaacaatgctttccttcatgg 162  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  19803344 tttacatcaattagatgtaaacaatgcctttcttcatgg 19803306  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 18498841 - 18498778
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 182  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  18498841 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 18498778  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 26360512 - 26360449
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtat 182  Q
    ||||||||||||||| | ||||| || ||||| || ||||||||||||||||||||| ||||||    
T  26360512 tggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaagaagatgtat 26360449  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 29500650 - 29500719
Alignment:
Q  116 aactggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtatata 185  Q
    |||||| ||||||||||| | ||||| |||||||||||||||||| ||||||| || ||| |||| ||||    
T  29500650 aactggaatttacatcaacttgatgttaacaatgctttccttcatagagatttacatgaagatgtttata 29500719  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 20482656 - 20482626
Alignment:
Q  135 tagatgtaaacaatgctttccttcatggaga 165  Q
    |||||||||||||||||||||||||||||||    
T  20482656 tagatgtaaacaatgctttccttcatggaga 20482626  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 28018531 - 28018561
Alignment:
Q  135 tagatgtaaacaatgctttccttcatggaga 165  Q
    |||||||||||||||||||||||||||||||    
T  28018531 tagatgtaaacaatgctttccttcatggaga 28018561  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 30154844 - 30154900
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagatttgcaagaa 175  Q
    |||||||||||||||||||||||||| ||||| ||  | |||||||| || ||||||    
T  30154844 tggcatttacatcaattagatgtaaataatgcgtttttgcatggagaattacaagaa 30154900  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 37177582 - 37177630
Alignment:
Q  123 atttacatcaattagatgtaaacaatgctttccttcatggagatttgca 171  Q
    ||||||||||| |||||||||| ||||| || || ||||||||||||||    
T  37177582 atttacatcaactagatgtaaataatgcctttctccatggagatttgca 37177630  T

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Target: scaffold1416 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 229 - 199
Alignment:
Q  135 tagatgtaaacaatgctttccttcatggaga 165  Q
    |||||||||||||||||||||||||||||||    
T  229 tagatgtaaacaatgctttccttcatggaga 199  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 16257678 - 16257727
Alignment:
Q  119 tggcatttacatcaattagatgtaaacaatgctttccttcatggagattt 168  Q
    |||||| |||| ||||||||||| ||||||||||| || |||||||||||    
T  16257678 tggcatctacaccaattagatgtgaacaatgcttttctccatggagattt 16257727  T

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