View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10557_low_4 (Length: 373)
Name: NF10557_low_4
Description: NF10557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10557_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 7340141 - 7340479
Alignment:
| Q |
18 |
atgatgtatcttaattcacggtgtatcttaacttaaccagcataaatagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaa |
117 |
Q |
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| T |
7340141 |
atgatgtatcttaattcacggtgtatctta-----accagcataaacagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaa |
7340235 |
T |
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| Q |
118 |
tctcaagaggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagacttcacgatctcctatccatactatttccag |
217 |
Q |
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| T |
7340236 |
tctcaagaggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagacttcacgatctcctatccatactatttccag |
7340335 |
T |
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| Q |
218 |
caaagacactgtaattaccaagtttctaagattcctttgtgaaaattcaannnnnnnnnnctccttgtcacccctttagttttaaaaatgaaaatctgtt |
317 |
Q |
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| T |
7340336 |
caaagacactgtaattaccaagtttctaagattcctttgtgaaaattcaa-tttttttttctccttgtcacccctttagttttaaaaatgaaaatctgtt |
7340434 |
T |
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| Q |
318 |
tgtaattgtgaacctgttgtagtctaagtcttcaattcacttcat |
362 |
Q |
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| T |
7340435 |
tgtaattgtgaacctgttgtagtctcagtcttcaattcacttcat |
7340479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 1547948 - 1548053
Alignment:
| Q |
88 |
aataatgcctgtattttaataccagtgcaatctcaagaggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagac |
187 |
Q |
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| T |
1547948 |
aataatgcttgtattttaataccagtgcaattt--------gtgaccacttctccctttagtaaacatgtttttcacaacttatatatggacatataaac |
1548039 |
T |
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| Q |
188 |
ttcacgatctccta |
201 |
Q |
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| T |
1548040 |
ttcatgatctccta |
1548053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 1548094 - 1548178
Alignment:
| Q |
278 |
ctccttgtcacccctttagttttaaaaatgaaaatctgtttgtaattgtgaacctgttgtagtctaagtcttcaattcacttcat |
362 |
Q |
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| T |
1548094 |
ctccttctcaacccttaagttttaaaaatgaaaagatgtttgtaaatgtgaacctgtcgtaaccttaatctacaattcacttcat |
1548178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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