View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_1 (Length: 474)
Name: NF10558_1
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_1 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 81 - 345
Target Start/End: Original strand, 54395056 - 54395314
Alignment:
| Q |
81 |
agccacctcttagcaggtagtatcagatttaagcgatataaattgacagaaattaaattgcattcattttatttcatctctcaattacactgatcacaca |
180 |
Q |
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| T |
54395056 |
agccacctcttaacaggtagtatcagatttaagcgatataaattgacagaaattaaattacattcattttatttcatctctcaattacactgatcacaca |
54395155 |
T |
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| Q |
181 |
aaact-aaaaaagac--atataaaaccttagacactcaagcctacctaccttctgtaact-aaacattaacaggacacaagacaagtttcatacacatac |
276 |
Q |
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| T |
54395156 |
aaactaaaaaaagacatatataaaaccttagacactcaagcctacctaccttctgtaactaaaacattaacaggac----------tttcatacacatac |
54395245 |
T |
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| Q |
277 |
aaccaatgtttcaaaaacttagtcaacctcttcaatcttaggtccagctccagagcctgtcccattaga |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54395246 |
aaccaatgtttcaaaaacttagtcaacctcttcaatcttaggtccagctccagagcctgtcccattaga |
54395314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 54395375 - 54395418
Alignment:
| Q |
403 |
ttgatacatcttagcaataataggattacaaattccttccaact |
446 |
Q |
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| T |
54395375 |
ttgatacatcttagcaataataggattacaaattccttccaact |
54395418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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