View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_2 (Length: 379)
Name: NF10558_2
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_2 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 3810116 - 3810453
Alignment:
| Q |
1 |
cagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatga |
100 |
Q |
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| T |
3810116 |
cagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaagagaggtgaataaaactttcatgatga |
3810215 |
T |
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| Q |
101 |
gcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagacaatgcaaagtctcatatttctaaaga |
200 |
Q |
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| T |
3810216 |
gcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaagagaatgcaaagtctcatatttctaaaga |
3810315 |
T |
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| Q |
201 |
tgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggc |
300 |
Q |
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| T |
3810316 |
tgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaattcacccgatttgaatgtcttggacttgggc |
3810396 |
T |
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| Q |
301 |
tttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatgat |
357 |
Q |
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| T |
3810397 |
tttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatgat |
3810453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
230 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
317 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
211 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
299 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
230 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
317 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
211 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
287 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
241 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
305 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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