View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_4 (Length: 306)
Name: NF10558_4
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 44 - 306
Target Start/End: Original strand, 1746930 - 1747184
Alignment:
| Q |
44 |
ctgtgcaaaacctaagttgacagtgaaggttgcaataagtatgacataataatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgta |
143 |
Q |
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| T |
1746930 |
ctgtgcaaaacctatgttggcagtgaaggttgcaataagtatgacacaataatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgta |
1747029 |
T |
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| Q |
144 |
atttataactttgtataacacataactaattgcattatattgcacattatataaaaatcttaacatacaagattactaggaaattatggtgcatagagta |
243 |
Q |
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| T |
1747030 |
atttataactttgtataacacataactaattgcattatattgcaccttatataaaaatcttaccatacaagattactaggaaattatggtgcatagagta |
1747129 |
T |
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| Q |
244 |
ataatcaaatacagaaaatctaagttggcattttcaaagnnnnnnnctagtttcaatcaatga |
306 |
Q |
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| T |
1747130 |
ataatcaaata--------ctaagttggcattttcaaagaaaaaaactagtttcaatcaatga |
1747184 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 6005809 - 6006005
Alignment:
| Q |
85 |
tgacataataatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatatt |
184 |
Q |
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| T |
6005809 |
tgacacaagaatcaagtccagatgatataattcaagggaaagtgaag-aaaactatataatttaaaacgatgtataacacccaacttgttatattacatt |
6005907 |
T |
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| Q |
185 |
gcacattatataaaaatcttaacatacaagattactaggaaattatggtgcatagagtaataatcaaatacagaaaatctaagttggcattttcaaag |
282 |
Q |
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| T |
6005908 |
gtgcattatataaatatgttaccatacacaattaattggcaattatgatgcacagggtgacaaacatatacaacaaatctaagttgacattttcaaag |
6006005 |
T |
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