View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_low_1 (Length: 328)
Name: NF10558_low_1
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 86588 - 86285
Alignment:
| Q |
18 |
aagcccacaattacaatggtcccaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggtttt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86588 |
aagcccacaattacaatggtctcaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggtttt |
86489 |
T |
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| Q |
118 |
gttctcaatttggataccacaaaaatagaaagtagaaggttttgtaattttattttcaaaactnnnnnnnngtctcactcacactgaagtaaatgataaa |
217 |
Q |
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| T |
86488 |
gttctcaatttggataccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact-aaaaaaagtctcactcacactgaagtaaatgataaa |
86390 |
T |
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| Q |
218 |
gtaa------------aataatagagaaaataagaaagaacctgttaataaaatgaagagagttgaaatggaaggttgatcatgcgagagtcactagtgt |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86389 |
gtaaaataattgttgtaataatagagaaaataagaaagaacctgttaataaaatgaagagagttgaaatggaaggttgatcatgcgagagtcactagtgt |
86290 |
T |
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| Q |
306 |
ctgtg |
310 |
Q |
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| T |
86289 |
ctgtg |
86285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 40879695 - 40879998
Alignment:
| Q |
18 |
aagcccacaattacaatggtcccaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggtttt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879695 |
aagcccacaattacaatggtctcaaaatttgatgcaaaaccaattctaatttgagaagcttatttgttttctttattatctaccgaccaaacttggtttt |
40879794 |
T |
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| Q |
118 |
gttctcaatttggataccacaaaaatagaaagtagaaggttttgtaattttattttcaaaactnnnnnnnngtctcactcacactgaagtaaatgataaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40879795 |
gttctcaatttggataccacaaaaatagaaagtagaaggttttgtaattttattttcaaaact-aaaaaaagtctcactcacactgaagtaaatgataaa |
40879893 |
T |
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| Q |
218 |
gtaa------------aataatagagaaaataagaaagaacctgttaataaaatgaagagagttgaaatggaaggttgatcatgcgagagtcactagtgt |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40879894 |
gtaaaataattgttgtaataatagagaaaataagaaagaacctgttaataaaatgaagagagttgaaatggaaggttgatcatgcgagagtcactagtgt |
40879993 |
T |
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| Q |
306 |
ctgtg |
310 |
Q |
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||||| |
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| T |
40879994 |
ctgtg |
40879998 |
T |
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