View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_low_2 (Length: 298)
Name: NF10558_low_2
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 15649263 - 15649106
Alignment:
| Q |
127 |
gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattaaaaaa-tatggacacaacgttcgttgaaggaagatccatttca |
225 |
Q |
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| T |
15649263 |
gttacaaaacttagacttacgaggaaacaataccatcatttgcaagtagcacaattaaaaaaatatggacacaacgttcgttgaaggaagatccatttca |
15649164 |
T |
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| Q |
226 |
aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatat |
283 |
Q |
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| T |
15649163 |
aagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatat |
15649106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 15658511 - 15658354
Alignment:
| Q |
127 |
gttacaaaacttagactta-cgaggaaacaataccatcatttgcaagtagcacaattaaaaaa-tatggacacaacgttcgttgaaggaagatccatttc |
224 |
Q |
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| T |
15658511 |
gttacaagacctagacttaacgagaaaaca-taccatcatttgcaggtaacacagctaaaaaaatatggacacaaccatcattgaaggaagatccatttc |
15658413 |
T |
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| Q |
225 |
aaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatat |
283 |
Q |
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| T |
15658412 |
aaagccaccatacttcgatggtacaaactgtactgaatggaaagagcgtacaaagatat |
15658354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 15628660 - 15628549
Alignment:
| Q |
179 |
aattaaaaaa-tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt------acaaactgtactgaatggaaagagc |
271 |
Q |
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| T |
15628660 |
aattaaaaaagtatggacacaacgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaacaaattgtactgaatggaaggagc |
15628561 |
T |
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| Q |
272 |
gtacaaagatat |
283 |
Q |
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| T |
15628560 |
gtataaagatat |
15628549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 15611577 - 15611467
Alignment:
| Q |
177 |
acaattaaaaaa-tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggt---acaaactgtactgaatggaaagagcg |
272 |
Q |
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| T |
15611577 |
acaattaaagaagtatggacacaatgatcgtggaagggagatccatttcaaagccaccatacttcgatggtacaacaaattgtactgagtggaaggagcg |
15611478 |
T |
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| Q |
273 |
tacaaagatat |
283 |
Q |
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|| |||||||| |
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| T |
15611477 |
tataaagatat |
15611467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 15649366 - 15649319
Alignment:
| Q |
18 |
gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac |
65 |
Q |
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| T |
15649366 |
gtggaaggaatctttcaaattaaaaatcatattcttgagcccaacgac |
15649319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 15524108 - 15524062
Alignment:
| Q |
205 |
gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaa |
251 |
Q |
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| T |
15524108 |
gttgaaggaagatccatttcaaagccaccatactttgatggtacaaa |
15524062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 15537189 - 15537143
Alignment:
| Q |
205 |
gttgaaggaagatccatttcaaagccaccatacttcgatggtacaaa |
251 |
Q |
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| T |
15537189 |
gttgaaggaagatccgtttcaaagccaccatacttcgatggtacaaa |
15537143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 15504577 - 15504506
Alignment:
| Q |
177 |
acaattaaaaaa-tatggacacaacgttcgttgaaggaagatccatttcaaagccaccatacttcgatggta |
247 |
Q |
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|||||||||||| |||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
15504577 |
acaattaaaaaagtatggacacaaccatcaatgaaggacgatccatttcaaagccaccattcttcgatggta |
15504506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 15658598 - 15658557
Alignment:
| Q |
24 |
ggaatctttcaaattaaaaatcatattcttgagcccaacgac |
65 |
Q |
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| T |
15658598 |
ggaatctttctcattaaaaatcatattcttgagcgcaacgac |
15658557 |
T |
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