View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10558_low_5 (Length: 281)

Name: NF10558_low_5
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10558_low_5
NF10558_low_5
[»] chr5 (18 HSPs)
chr5 (17-273)||(30241126-30241382)
chr5 (57-258)||(29854431-29854629)
chr5 (57-258)||(29873294-29873492)
chr5 (53-258)||(30337309-30337511)
chr5 (57-258)||(30750766-30750964)
chr5 (57-258)||(30061492-30061690)
chr5 (57-258)||(30401194-30401395)
chr5 (153-273)||(30207627-30207747)
chr5 (57-241)||(30676076-30676257)
chr5 (17-136)||(30437052-30437171)
chr5 (57-206)||(30712216-30712362)
chr5 (57-144)||(30484632-30484719)
chr5 (159-273)||(30476480-30476594)
chr5 (184-273)||(30520537-30520626)
chr5 (184-273)||(30560877-30560966)
chr5 (186-258)||(17417507-17417579)
chr5 (164-223)||(30329730-30329789)
chr5 (172-242)||(17984020-17984090)
[»] chr7 (1 HSPs)
chr7 (17-206)||(26708504-26708690)
[»] chr4 (2 HSPs)
chr4 (57-206)||(20295370-20295516)
chr4 (113-206)||(52353131-52353223)
[»] chr3 (1 HSPs)
chr3 (153-256)||(25292828-25292931)
[»] chr1 (2 HSPs)
chr1 (172-258)||(7100541-7100627)
chr1 (172-258)||(7580619-7580705)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 30241126 - 30241382
Alignment:
Q  17 cgatcaagtctagtcgactgagaggattaacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30241126 cgatcaagtctagtcgactgagaggattaacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaacgggaggttggatgatattgc 30241225  T
Q  117 tgataggaagaagaagttttttctacaggaaggtactggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgtt 216  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |    
T  30241226 tgataggaggaagaagttttttctgcaggaaggtactggaactgttcgggaaagcccaaatgacgtagctgaatggcgtcaaaccagcgctattattact 30241325  T
Q  217 gaaccaaccgtgtttggacgagaagacgataaaaagaagattatcaggtttcttctc 273  Q
    |||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  30241326 gaaccaaaagtgtttggacgagaagacgataaaaagaagattatccagtttcttctc 30241382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 258
Target Start/End: Complemental strand, 29854629 - 29854431
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    |||||||||||||||||| ||||||||| |||||||||   |||  |||||||||||||||||||| ||||| ||||||||||||| ||| ||||||       
T  29854629 gtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctacgggagggtact--- 29854533  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaaga 256  Q
    | ||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||  ||||||||||||||||| |||||| | ||||    
T  29854532 attgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaaagtgtttggacgagaagatgataaagaaaaga 29854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 258
Target Start/End: Complemental strand, 29873492 - 29873294
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    |||||||| ||||||||| ||||||||| |||||||||   |||| |||||||||||||||||||| ||||| ||||||||||||| ||| ||||||       
T  29873492 gtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctacgggagggtact--- 29873396  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaaga 256  Q
    | ||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  || |||||||||||||| |||||| | ||||    
T  29873395 attgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggacgagaagatgataaagaaaaga 29873296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 53 - 258
Target Start/End: Original strand, 30337309 - 30337511
Alignment:
Q  53 tcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtac 152  Q
    |||||||||||||||||||||||||||||||| |||||||||   ||||||| ||| ||||||||||  | ||||| ||||||| |||||||   ||       
T  30337309 tcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagataatattgctgaacgtaagaacaagttttctctacagatggg--- 30337405  T
Q  153 tggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaag 252  Q
    ||||||| || |||||| |||| || ||||||||||| |||| |||||| |||| ||||||| ||||||||  ||||||||||||||||  |||||| |     
T  30337406 tggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaa 30337505  T
Q  253 aagatt 258  Q
    ||||||    
T  30337506 aagatt 30337511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 258
Target Start/End: Complemental strand, 30750964 - 30750766
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||   ||   ||||    
T  30750964 gtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatggg---tgga 30750868  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaaga 256  Q
    ||| || |||||| |||| || ||||||||||| |||| |||||| |||| ||||||| ||||||||  ||||||||||||||||  |||||| | ||||    
T  30750867 actcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaaga 30750768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 258
Target Start/End: Complemental strand, 30061690 - 30061492
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||   ||   |||     
T  30061690 gtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatggg---tggc 30061594  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaaga 256  Q
    ||| || |||||| |||| || ||||||||||| |||| |||||| |||| ||||||| ||||||||  ||||||||||||||||  |||||| | ||||    
T  30061593 actcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaaga 30061494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 258
Target Start/End: Complemental strand, 30401395 - 30401194
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    |||||||| | ||||||| ||||||||| |||||||||   | || |||||||||||||||||||  ||||| || ||| ||||||  || ||||||| |    
T  30401395 gtttcgccgtcagatcggcaacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaaatttcttctacgagatggtactgta 30401296  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaaga 256  Q
      |||| |||||||| || ||||||||| |||||||||||||| || ||| ||||||| | |||||   |||||||||||| |||| |||||| | ||||    
T  30401295 tatgttagggaaagctcagatgaagtagatgaatggcgtcaaatcaactccattattgctaaaccagaagtgtttggacgaaaagatgataaagaaaaga 30401196  T
Q  257 tt 258  Q
    ||    
T  30401195 tt 30401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 30207747 - 30207627
Alignment:
Q  153 tggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaag 252  Q
    ||||||| || |||||||  ||| ||||||||| |||||||||||||| ||||||||||||| ||||||||  || ||||| |||||||| |||||| ||    
T  30207747 tggaacttttagggaaagatcaattgaagtagcagaatggcgtcaaactagctctattattgctgaaccaaaagtatttgggcgagaagatgataaagag 30207648  T
Q  253 aagattatcaggtttcttctc 273  Q
    |||||||||  ||||||||||    
T  30207647 aagattatcgagtttcttctc 30207627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 30676076 - 30676257
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    |||||||  ||||||||| ||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||   |||   |||    
T  30676076 gtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgggt---gga 30676172  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaag 241  Q
    ||| || |||||| |||| || ||||||||||| |||| |||||| |||| ||||||| |||| |||  ||||||||||||||||    
T  30676173 actcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttggacgagaag 30676257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 30437171 - 30437052
Alignment:
Q  17 cgatcaagtctagtcgactgagaggattaacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgc 116  Q
    |||||||||||||||||||||||  ||| || ||| | |||||||||||| ||||||||||||||||| |||||||||   |||||||||||  ||||||    
T  30437171 cgatcaagtctagtcgactgagaaaattcacatctttaaagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgc 30437072  T
Q  117 tgataggaagaagaagtttt 136  Q
    |||  | ||||| |||||||    
T  30437071 tgaacgtaagaacaagtttt 30437052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 30712216 - 30712362
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    ||||||||||||||| |||||||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||   ||   ||||    
T  30712216 gtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatggg---tgga 30712312  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctc 206  Q
    ||| || |||||| |||| || ||||||||||| |||| |||||||||||    
T  30712313 actcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctc 30712362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 30484719 - 30484632
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacag 144  Q
    ||||||||||||||| |||||||||||| |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||    
T  30484719 gtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttttctctacag 30484632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 30476594 - 30476480
Alignment:
Q  159 tgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagatt 258  Q
    |||| ||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||| |||||| |  ||||||||||||| ||| |||| | ||| ||||    
T  30476594 tgttagggaaaggccaaatgaagttgctgaatggcgccaaacaagctccattattgctgaacccaaagtgtttggacgagtagatgatagagagaggatt 30476495  T
Q  259 atcaggtttcttctc 273  Q
     ||  ||||||||||    
T  30476494 gtcgagtttcttctc 30476480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 30520537 - 30520626
Alignment:
Q  184 gctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagattatcaggtttcttctc 273  Q
    ||||||||||||||||| ||||||||||||| ||||||||  || | ||| |||||||| |||||| |||||||| ||  ||||||||||    
T  30520537 gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctc 30520626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 30560877 - 30560966
Alignment:
Q  184 gctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagattatcaggtttcttctc 273  Q
    ||||||||||||||||| ||||||||||||| ||||||||  || | ||| |||||||| |||||| |||||||| ||  ||||||||||    
T  30560877 gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctc 30560966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 17417507 - 17417579
Alignment:
Q  186 tgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagatt 258  Q
    ||||||||| |||||||||||  |||||| ||||||||  ||||||||||| ||||| |||| ||||||||||    
T  17417507 tgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgggaagatgatacaaagaagatt 17417579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 30329730 - 30329789
Alignment:
Q  164 gggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaa 223  Q
    ||||||| ||| |||||||||||||||| || |||||||||| | |||||| ||||||||    
T  30329730 gggaaaggccacatgaagtagctgaatgacgccaaaccagctttgttattgctgaaccaa 30329789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 17984090 - 17984020
Alignment:
Q  172 ccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaaga 242  Q
    |||| |||||| ||||||||||| ||||||||| |  |||||| |||| |||  |||||||||||||||||    
T  17984090 ccaagtgaagtggctgaatggcgccaaaccagccccgttattgctgaatcaaaagtgtttggacgagaaga 17984020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 26708690 - 26708504
Alignment:
Q  17 cgatcaagtctagtcgactgagaggattaacctctctcaagtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgc 116  Q
    ||||||||||||||||||||| |  ||| |||||| | |||||||||||| ||||||||||||||||| |||||||||   |||||||||||  ||||||    
T  26708690 cgatcaagtctagtcgactgaaaaaattcacctctttaaagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgc 26708591  T
Q  117 tgataggaagaagaagttttttctacaggaaggtactggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctc 206  Q
    |||  | ||||| ||||||| |||||||   ||   ||||||| || ||||||||||| || ||||||||||| |||| |||||||||||    
T  26708590 tgaacgtaagaacaagttttctctacagacggg---tggaactcttagggaaagcccatatcaagtagctgaagggcgccaaaccagctc 26708504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 20295370 - 20295516
Alignment:
Q  57 gtttcgccatgagatcggtaacaggttggaagagattaaccggaggttggatgatattgctgataggaagaagaagttttttctacaggaaggtactgga 156  Q
    |||||||||||||||||||| ||||||  |||||||||   ||||||| |||||||||||||| || ||||| ||||||| |||||||   ||   ||||    
T  20295370 gtttcgccatgagatcggtagcaggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatggg---tgga 20295466  T
Q  157 actgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctc 206  Q
    ||| || |||||| |||| || ||||||||||| |||| |||||||||||    
T  20295467 actcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctc 20295516  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 52353223 - 52353131
Alignment:
Q  113 ttgctgataggaagaagaagttttttctacaggaaggtactggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctc 206  Q
    ||||||| |||||||| |||||| ||||||  || ||||||||||||||| || ||||| ||| |||| ||||||||||||| |||||||||||    
T  52353223 ttgctgaaaggaagaacaagtttcttctacgagagggtactggaactgttagg-aaagctcaactgaaatagctgaatggcgccaaaccagctc 52353131  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 25292828 - 25292931
Alignment:
Q  153 tggaactgttcgggaaagcccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaag 252  Q
    |||||||||| |||||||| ||| |||||||||||||| ||| ||||| || ||||||||||  |||||||  || |||||||||||||| |||||| ||    
T  25292828 tggaactgttagggaaagctcaactgaagtagctgaatagcgccaaactagttctattattgccgaaccaaaagtatttggacgagaagatgataaagag 25292927  T
Q  253 aaga 256  Q
    ||||    
T  25292928 aaga 25292931  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 7100627 - 7100541
Alignment:
Q  172 ccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagatt 258  Q
    |||| |||||| ||||||||||| |||||||||||  |||||| ||||||||   |||||||||||||||| |||||| ||||||||    
T  7100627 ccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaaccaaagatgtttggacgagaagatgataaagagaagatt 7100541  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 7580619 - 7580705
Alignment:
Q  172 ccaaatgaagtagctgaatggcgtcaaaccagctctattattgttgaaccaaccgtgtttggacgagaagacgataaaaagaagatt 258  Q
    |||| |||||| ||||| ||||| ||||||||||| |||||||  |||||||  ||||||||||||||||| |||||| ||| ||||    
T  7580619 ccaattgaagtggctgactggcgccaaaccagctccattattgccgaaccaaaggtgtttggacgagaagatgataaagagaggatt 7580705  T

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