View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_low_6 (Length: 247)
Name: NF10558_low_6
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 46642255 - 46642016
Alignment:
| Q |
1 |
ttgtgctgcaaattgacattactcttataaaataataatgtaattggtttggttagacatttaaatggtgtgacatataggttatccataaaagaatggt |
100 |
Q |
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| T |
46642255 |
ttgtgctgcaaattgacgttactcttataaaataataatgtaattggtttggttagacgtttaaatggtgtgacatctaggttacctataaaagaatagt |
46642156 |
T |
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| Q |
101 |
aggtaattaatcttaacaaatgaaaatattcacatttttaggtggtatccttcatggatttcgtgcatgtggatttcctccggtggaaatctctcccatc |
200 |
Q |
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| T |
46642155 |
aggtaatttatactaacgaat--aaatattcacatttttaagtggtatccttcatggatttcgtgcatgtggatttccttcggtggaaatctctccaatc |
46642058 |
T |
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| Q |
201 |
ttctgcagtgacataatttgcaccattaattttcttctctct |
242 |
Q |
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| T |
46642057 |
ctctgcagtgacataatttacaccattaattatcttctctct |
46642016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 46639960 - 46639893
Alignment:
| Q |
1 |
ttgtgctgcaaattgacattactcttataaaataataat---gtaattggtttggttagacatttaaa |
65 |
Q |
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| T |
46639960 |
ttgtgctgcaaattgacattactcttataaaataataatagagtgattggtttggttagacatttaaa |
46639893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 29966171 - 29966101
Alignment:
| Q |
170 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
240 |
Q |
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| T |
29966171 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
29966101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 30008627 - 30008697
Alignment:
| Q |
170 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
240 |
Q |
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| T |
30008627 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
30008697 |
T |
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