View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_low_7 (Length: 243)
Name: NF10558_low_7
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36892904 - 36892675
Alignment:
| Q |
1 |
tcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaa |
100 |
Q |
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| T |
36892904 |
tcatccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaa |
36892805 |
T |
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| Q |
101 |
caagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttgctgc |
200 |
Q |
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| T |
36892804 |
caagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctgc |
36892705 |
T |
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| Q |
201 |
aaccaaaaatggtgtcatctttttcttgat |
230 |
Q |
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| T |
36892704 |
aaccaaaaatggtgtcatctttttcttgat |
36892675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 36881818 - 36881599
Alignment:
| Q |
3 |
atccattgcaagaatcaaattattccaaagttctggttttgaatgcttaatcattctca------aggtctcaacaataagaggttgcctgtatttgact |
96 |
Q |
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| T |
36881818 |
atccattgcaagaattaagttattccaaagttctggttttgagtgcttaatcattctcattctcaatgtctcaacaataacgggttgtcttgacttcact |
36881719 |
T |
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| Q |
97 |
gcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaactattccattttttg |
196 |
Q |
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| T |
36881718 |
gcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaattttgtctagaaattcgttaaccagttcaactattccatttttcg |
36881619 |
T |
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| Q |
197 |
ctgcaaccaaaaatggtgtc |
216 |
Q |
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| T |
36881618 |
ctgcaaccaaaaatggtgtc |
36881599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 214
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
84 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattagaatttcgttaaccatttcaact |
183 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||||||||||| || ||||||||| | |
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| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
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| Q |
184 |
attccattttttgctgcaaccaaaaatggtg |
214 |
Q |
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| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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