View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10558_low_8 (Length: 239)
Name: NF10558_low_8
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_8 |
 | |
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| [»] scaffold0196 (1 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11621106 - 11621328
Alignment:
| Q |
1 |
catggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11621106 |
catggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaatcacataatatcagtagagaggcta |
11621205 |
T |
|
| Q |
101 |
aatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11621206 |
aatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataact |
11621305 |
T |
|
| Q |
201 |
tgaaggtaattggtaattacttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11621306 |
tgaaggtaattggtaattacttt |
11621328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11671213 - 11671006
Alignment:
| Q |
1 |
catggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggcta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
11671213 |
catggctctaacttatggcctttcactaaacggtgccttaatattttcaattcaaaatcaatgcactcttgcaaataacataatatcagtagagaggcta |
11671114 |
T |
|
| Q |
101 |
aatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataact |
200 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||| |||||| ||||||| |||||| |||||||||||||||||| |||||||||||||| ||| |
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|
| T |
11671113 |
aatcaatatatgcatatagaaagtgaagcggaagaaatagtagaagaaaatcgttctccttcgaattggccagttgctggcaaagtagaaataaatgact |
11671014 |
T |
|
| Q |
201 |
tgaaggta |
208 |
Q |
| |
|
|||||||| |
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|
| T |
11671013 |
tgaaggta |
11671006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 11629307 - 11629097
Alignment:
| Q |
1 |
catggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggcta |
100 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| | ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
11629307 |
catggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgcactgttgctaatcacataatatcagtagagaggcta |
11629208 |
T |
|
| Q |
101 |
aatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataact |
200 |
Q |
| |
|
|| ||||| ||||||||| |||| ||||| ||||||| |||||| ||| |||||||||| | ||||||||||||| || |||||||||||||||| | |
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|
| T |
11629207 |
aaacaatacatgcatatagaaagtgaggcgaaagaaatagtagaagaaaaccgtcctccttcgtattggccagttgccggcaaagtagaaataaataatt |
11629108 |
T |
|
| Q |
201 |
tgaaggtaatt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
11629107 |
tgaaggtaatt |
11629097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 11666001 - 11666160
Alignment:
| Q |
52 |
tcaaaatcaatgcactcttgctaaccacataatatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaat |
151 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
11666001 |
tcaaattcaatgcactcttgcaaatcatataatatcagtagagaggctaaatcaatatatgcatatacaaagtgaggctaaagaaattgtagaaggaaat |
11666100 |
T |
|
| Q |
152 |
cgtcctcctttgaattggccagttgctggagaagtagaaataaataacttgaaggtaatt |
211 |
Q |
| |
|
| |||||||||||||||||||||||| || |||| |||||| | || ||||||||||| |
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|
| T |
11666101 |
catcctcctttgaattggccagttgcaggcaaagtcgaaatatgtgacctgaaggtaatt |
11666160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 11707537 - 11707373
Alignment:
| Q |
48 |
caattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaagg |
147 |
Q |
| |
|
|||||||| ||| ||||||||||| || || ||||||||||| ||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||| |
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|
| T |
11707537 |
caattcaatgtcagtgcactcttgcaaatcagataatatcagttgagaggctagatcaatatatgcatatacaaagtgaggccaaagaaatcgtagaagg |
11707438 |
T |
|
| Q |
148 |
aaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataacttgaaggtaattg |
212 |
Q |
| |
|
|||||| ||||||||||| |||||| |||| || |||||||||||||| ||||||||||||||| |
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|
| T |
11707437 |
aaatcgccctcctttgaactggccaattgcaggcaaagtagaaataaatgacttgaaggtaattg |
11707373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 11758984 - 11759111
Alignment:
| Q |
84 |
tatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggaga |
183 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||| ||| |||||| ||||| | | |||||||||| |||||| | |||||||||| || |||| | |
|
|
| T |
11758984 |
tatcagtagaaaggataaatcaatactctcatataccaagtgaggcccaagaagtgagtgaaggaaatcatcctccaatcaattggccagatgttggaaa |
11759083 |
T |
|
| Q |
184 |
agtagaaataaataacttgaaggtaatt |
211 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
11759084 |
agttgaaataaaagacttgaaggtaatt |
11759111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 12090438 - 12090311
Alignment:
| Q |
84 |
tatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggaga |
183 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||| ||| |||||| ||||| | | |||||||||| |||||| | |||||||||| || ||| | |
|
|
| T |
12090438 |
tatcagtagaaaggataaatcaatactctcatataccaagtgaggcccaagaagtgagtgaaggaaatcatcctccaatcaattggccagatgtcggaaa |
12090339 |
T |
|
| Q |
184 |
agtagaaataaataacttgaaggtaatt |
211 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
12090338 |
agttgaaataaaagacttgaaggtaatt |
12090311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 11736788 - 11736687
Alignment:
| Q |
92 |
gagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaa |
191 |
Q |
| |
|
|||||| |||||||||| | ||||||| ||| |||||| || || | || ||||||||||||||||| | |||||||||| ||| || ||||||||| |
|
|
| T |
11736788 |
gagaggataaatcaatacactcatataccaagtgaggcccaacaagtgattgaaggaaatcgtcctccggttaattggccagctgcaggcaaagtagaaa |
11736689 |
T |
|
| Q |
192 |
ta |
193 |
Q |
| |
|
|| |
|
|
| T |
11736688 |
ta |
11736687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 15618 - 15828
Alignment:
| Q |
1 |
catggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggcta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||| || ||||||||||||| ||||| ||| |
|
|
| T |
15618 |
catggctctatcttatggcctatcactaaacgctgccttagtatactcaattcaacatcaatgcactcttgcaaattacataatatcagtggagagacta |
15717 |
T |
|
| Q |
101 |
aatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataact |
200 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||| | |||| ||| |||||||||||||||||||||||||| || |||||||||||||| | | |
|
|
| T |
15718 |
aatcaatatatgcatataaaaagtgaagcggaagaaatagttgaagaaaaccgtcctcctttgaattggccagttgcaggcaaagtagaaataaatgatt |
15817 |
T |
|
| Q |
201 |
tgaaggtaatt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
15818 |
tgaaggtaatt |
15828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 5860 - 5662
Alignment:
| Q |
17 |
ggcctatcactaaacggtgccttaatatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggctaaatcaatatatgcata |
116 |
Q |
| |
|
||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5860 |
ggcctttcactaaacaattccttagtattttcaattcaaaatcaatgcactcttgcgaatcacataatatcagtagagagattaaatcaatatatgcata |
5761 |
T |
|
| Q |
117 |
tacaaagcgaggccgaagaaattatagaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataacttgaaggtaattggta |
215 |
Q |
| |
|
|||||||||||||| | |||| | ||||||| |||||||||||| |||||||||||||||| || ||||| ||||||| |||| ||||||||||||| |
|
|
| T |
5760 |
tacaaagcgaggccaaggaaactgtagaaggtaatcgtcctcctctgaattggccagttgcaggcaaagtaaaaataaacgacttaaaggtaattggta |
5662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 16390774 - 16390610
Alignment:
| Q |
48 |
caattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaagg |
147 |
Q |
| |
|
||||||||| ||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
16390774 |
caattcaaagtcagtgcactcttgcaaatcaaataatatcagtcgagaggctaaatcaatatatgcatatacaaagtgaggccaaagaaatcgtagaagg |
16390675 |
T |
|
| Q |
148 |
aaatcgtcctcctttgaattggccagttgctggagaagtagaaataaataacttgaaggtaattg |
212 |
Q |
| |
|
|||||| |||||||||||||||||| |||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
16390674 |
aaatcgccctcctttgaattggccaattgcaggcaaagtagaaataaatgacttgaaggtaattg |
16390610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 44814394 - 44814547
Alignment:
| Q |
42 |
tatttgcaattcaaaatcaatgcactcttgctaaccacataatatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattat |
141 |
Q |
| |
|
||||| |||||||||||||||||| | | || || | ||||||||||| |||||||||||||||||||||||| ||| ||| ||||| ||||| || |
|
|
| T |
44814394 |
tattttcaattcaaaatcaatgcaatatagcaaattatataatatcagtggagaggctaaatcaatatatgcatgtaccaagtgaggctccagaaagaat |
44814493 |
T |
|
| Q |
142 |
agaaggaaatcgtcctcctttgaattggccagttgctggagaagtagaaataaa |
195 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
44814494 |
tgaaggaaatcgccctccggtgaattggccagttgttggtagagtagaaataaa |
44814547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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