View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10558_low_9 (Length: 237)
Name: NF10558_low_9
Description: NF10558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10558_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39299711 - 39299932
Alignment:
| Q |
1 |
tcaaactgtctaaacaatcatcatcagccttcaacaaagtgttcagttgagttgattcacgtgctttcggaaaagcaaaaattgaccttttcagcttatc |
100 |
Q |
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| T |
39299711 |
tcaaactgtctaaccaatcatcggcagccttcaacaaagtgttcagttgagttgattcacgtgctttcggaaaagccaaaattgaccttttcagcttatc |
39299810 |
T |
|
| Q |
101 |
agtagttaggccaaaaattggaagaggcattttcagcggtccatctccatcatgcagctttggttgatttttgcctgtgacgaaggaagagatataaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299811 |
agtagttaggccaaaaattggaagaggcattttcagcggtccatctccatcatgcaactttggttgatttttgcctgtgacgaaggaagagatataaaat |
39299910 |
T |
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| Q |
201 |
tagataggtgaaacaaagaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39299911 |
tagataggtgaaacaaagaagt |
39299932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 39307571 - 39307756
Alignment:
| Q |
25 |
cagccttcaacaaagtgttcagttgagttgattcacgtgctttcggaaaagcaaaaattgaccttttcagcttatcagtagttaggccaaaaattggaag |
124 |
Q |
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||||||||||||||| ||||| || | ||||| ||||||||||| || |||||||||| || ||| |||| |||||||| ||||||||| |||| |
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| T |
39307571 |
cagccttcaacaaagagttcatttcatctgattttgctgctttcggaagagtcaaaattgacccttccaggttataagtagttatgccaaaaataggaat |
39307670 |
T |
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| Q |
125 |
aggcattttcagcggtccatctccatcatgcagctttggttgatttttgcctgtgacgaaggaagagatataaaattagataggtgaaacaa |
216 |
Q |
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| T |
39307671 |
aggcatcttcaaggattcatct------tgcaactttaattgatttttagctgtgagaaaggaagagatataaaattagctaggtgaaacaa |
39307756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 26563563 - 26563604
Alignment:
| Q |
159 |
tttggttgatttttgcctgtgacgaaggaagagatataaaat |
200 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26563563 |
tttggttgatttttgcctgtgagaaaggtagagatataaaat |
26563604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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