View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10559_high_12 (Length: 281)

Name: NF10559_high_12
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10559_high_12
NF10559_high_12
[»] chr1 (5 HSPs)
chr1 (18-281)||(6261820-6262083)
chr1 (22-57)||(23895353-23895388)
chr1 (18-61)||(40943234-40943277)
chr1 (224-270)||(6270843-6270889)
chr1 (20-56)||(35017601-35017637)
[»] chr6 (4 HSPs)
chr6 (111-146)||(17240693-17240728)
chr6 (20-57)||(2455834-2455871)
chr6 (23-56)||(8420209-8420242)
chr6 (20-56)||(7148691-7148727)
[»] chr5 (2 HSPs)
chr5 (18-61)||(41052888-41052931)
chr5 (17-57)||(33533545-33533585)
[»] chr7 (1 HSPs)
chr7 (18-56)||(28165116-28165154)
[»] chr2 (3 HSPs)
chr2 (20-57)||(34652045-34652082)
chr2 (20-56)||(1939341-1939377)
chr2 (17-57)||(16867763-16867803)
[»] chr4 (2 HSPs)
chr4 (18-54)||(6466053-6466089)
chr4 (20-56)||(6987750-6987786)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 6262083 - 6261820
Alignment:
Q  18 ttcataagctattttcaacttatttccacaagctctccaaaatattattgtaactaactattacatctaatgtgataactagtctagctagtttgtgcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262083 ttcataagctattttcaacttatttccacaagctctccaaaatattattgtaactaactattacatctaatgtgataactagtctagctagtttgtgcat 6261984  T
Q  118 gtttgaattgacggcgagtttgacagaattacggtgtcactcaaaatcagtgtcatcgtgattatgtcaaattcacggtgatttcaaataagttcttaat 217  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  6261983 gtttgaattgacggcgagtttgacagaatcacgatgtcactcaaaatcagtgtcatcgtgattatgtcaaaatcacagtgatttcaaacaagttcttaat 6261884  T
Q  218 gaagtggaatagatcatcacttacatctcacttgttcatccttacaaatctctttaacaagagt 281  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6261883 gaagtggaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagt 6261820  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 23895388 - 23895353
Alignment:
Q  22 taagctattttcaacttatttccacaagctctccaa 57  Q
    ||||||||||| ||||||||||||||||||||||||    
T  23895388 taagctatttttaacttatttccacaagctctccaa 23895353  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 40943234 - 40943277
Alignment:
Q  18 ttcataagctattttcaacttatttccacaagctctccaaaata 61  Q
    ||||||| || ||||||||||||||| |||||||||||||||||    
T  40943234 ttcataaactgttttcaacttatttctacaagctctccaaaata 40943277  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 6270889 - 6270843
Alignment:
Q  224 gaatagatcatcacttacatctcacttgttcatccttacaaatctct 270  Q
    |||||||| ||||||||| |||||||||||||||  |||||||||||    
T  6270889 gaatagattatcacttacctctcacttgttcatctctacaaatctct 6270843  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 35017637 - 35017601
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctcca 56  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  35017637 cataagttattttcaacttatttccataagctctcca 35017601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 17240693 - 17240728
Alignment:
Q  111 tgtgcatgtttgaattgacggcgagtttgacagaat 146  Q
    ||||||||||||||||||||| ||||||||||||||    
T  17240693 tgtgcatgtttgaattgacggtgagtttgacagaat 17240728  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 2455871 - 2455834
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctccaa 57  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  2455871 cataaactattttcaacttatttccataagctctccaa 2455834  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 8420209 - 8420242
Alignment:
Q  23 aagctattttcaacttatttccacaagctctcca 56  Q
    ||||||||||||||||||||||| ||||||||||    
T  8420209 aagctattttcaacttatttccataagctctcca 8420242  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 7148727 - 7148691
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctcca 56  Q
    ||||||||||||||||||||||| || ||||||||||    
T  7148727 cataagctattttcaacttattttcataagctctcca 7148691  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 41052931 - 41052888
Alignment:
Q  18 ttcataagctattttcaacttatttccacaagctctccaaaata 61  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||    
T  41052931 ttcataaactatttttaacttatttccataagctctccaaaata 41052888  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 33533545 - 33533585
Alignment:
Q  17 attcataagctattttcaacttatttccacaagctctccaa 57  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  33533545 attcataagttgttttcaacttatttccataagctctccaa 33533585  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 28165154 - 28165116
Alignment:
Q  18 ttcataagctattttcaacttatttccacaagctctcca 56  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  28165154 ttcataagctgttttcaacttatttccataagctctcca 28165116  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 34652045 - 34652082
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctccaa 57  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  34652045 cataagctgttttcaacttatttccataagctctccaa 34652082  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 1939341 - 1939377
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctcca 56  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  1939341 cataagctgttttcaacttatttccataagctctcca 1939377  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 16867803 - 16867763
Alignment:
Q  17 attcataagctattttcaacttatttccacaagctctccaa 57  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  16867803 attcataagttgttttcaacttatttccataagctctccaa 16867763  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 6466053 - 6466089
Alignment:
Q  18 ttcataagctattttcaacttatttccacaagctctc 54  Q
    |||||||||||||||||||||||||||| || |||||    
T  6466053 ttcataagctattttcaacttatttccataatctctc 6466089  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 6987750 - 6987786
Alignment:
Q  20 cataagctattttcaacttatttccacaagctctcca 56  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  6987750 cataaactattttcaacttatttccataagctctcca 6987786  T

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