View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10559_high_13 (Length: 279)

Name: NF10559_high_13
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10559_high_13
NF10559_high_13
[»] scaffold0432 (1 HSPs)
scaffold0432 (18-269)||(8854-9105)
[»] chr5 (7 HSPs)
chr5 (18-269)||(40973370-40973621)
chr5 (18-269)||(25982277-25982528)
chr5 (18-207)||(19021150-19021339)
chr5 (18-207)||(22580552-22580744)
chr5 (21-207)||(26369096-26369282)
chr5 (18-207)||(22639319-22639508)
chr5 (20-150)||(39566916-39567045)
[»] chr7 (15 HSPs)
chr7 (18-269)||(18299544-18299795)
chr7 (18-269)||(32575223-32575474)
chr7 (18-252)||(38141993-38142228)
chr7 (18-269)||(15669445-15669697)
chr7 (18-252)||(19323978-19324213)
chr7 (18-258)||(29125964-29126203)
chr7 (18-252)||(29626667-29626902)
chr7 (18-208)||(41767908-41768098)
chr7 (20-207)||(1031986-1032173)
chr7 (18-231)||(5899867-5900079)
chr7 (23-201)||(19294478-19294656)
chr7 (18-197)||(9942763-9942942)
chr7 (40-207)||(40871465-40871632)
chr7 (102-208)||(17194042-17194148)
chr7 (21-207)||(40858181-40858367)
[»] chr6 (9 HSPs)
chr6 (18-252)||(7093676-7093911)
chr6 (22-268)||(24795199-24795444)
chr6 (18-208)||(8753076-8753266)
chr6 (18-207)||(24393664-24393853)
chr6 (18-134)||(32737279-32737395)
chr6 (95-166)||(30987204-30987275)
chr6 (29-207)||(12912411-12912589)
chr6 (18-195)||(18972783-18972961)
chr6 (26-207)||(6029088-6029269)
[»] chr4 (17 HSPs)
chr4 (18-252)||(40345898-40346133)
chr4 (18-269)||(30598328-30598580)
chr4 (18-269)||(50771559-50771811)
chr4 (18-207)||(36651892-36652081)
chr4 (18-207)||(43499057-43499246)
chr4 (18-207)||(9896657-9896846)
chr4 (18-207)||(42718330-42718519)
chr4 (18-213)||(7743332-7743527)
chr4 (21-207)||(40850567-40850753)
chr4 (26-207)||(48640492-48640673)
chr4 (21-207)||(56024798-56024984)
chr4 (35-207)||(47590616-47590788)
chr4 (18-207)||(39059872-39060061)
chr4 (18-130)||(53584970-53585082)
chr4 (29-207)||(37870809-37870987)
chr4 (41-128)||(23106851-23106938)
chr4 (33-92)||(20401518-20401577)
[»] chr3 (7 HSPs)
chr3 (18-269)||(53459005-53459257)
chr3 (37-234)||(28432662-28432859)
chr3 (102-233)||(26900397-26900528)
chr3 (21-207)||(10436592-10436778)
chr3 (21-207)||(20406132-20406318)
chr3 (18-190)||(14854439-14854611)
chr3 (102-227)||(20692219-20692344)
[»] chr1 (17 HSPs)
chr1 (18-252)||(15759711-15759946)
chr1 (21-207)||(20505398-20505584)
chr1 (21-207)||(26676652-26676838)
chr1 (18-232)||(31911684-31911898)
chr1 (18-207)||(33936187-33936376)
chr1 (21-207)||(46731822-46732008)
chr1 (26-203)||(27007552-27007729)
chr1 (21-208)||(33676656-33676843)
chr1 (18-207)||(4532238-4532427)
chr1 (29-206)||(19228051-19228228)
chr1 (43-208)||(28756638-28756803)
chr1 (29-207)||(34549122-34549300)
chr1 (20-150)||(42966908-42967038)
chr1 (102-207)||(51534629-51534734)
chr1 (25-141)||(16541102-16541218)
chr1 (83-237)||(8164316-8164470)
chr1 (36-68)||(36598351-36598383)
[»] chr2 (8 HSPs)
chr2 (18-207)||(6764180-6764369)
chr2 (18-207)||(12410547-12410736)
chr2 (18-207)||(12422607-12422796)
chr2 (18-207)||(37647725-37647914)
chr2 (29-207)||(11031549-11031727)
chr2 (102-207)||(3044174-3044279)
chr2 (26-207)||(2380782-2380963)
chr2 (128-207)||(27271509-27271588)
[»] scaffold0300 (1 HSPs)
scaffold0300 (18-207)||(9337-9526)
[»] chr8 (10 HSPs)
chr8 (21-207)||(9932257-9932443)
chr8 (77-207)||(45540134-45540264)
chr8 (35-207)||(25582742-25582914)
chr8 (29-207)||(13089938-13090116)
chr8 (18-208)||(33574259-33574449)
chr8 (18-213)||(24503814-24504009)
chr8 (29-207)||(4034452-4034630)
chr8 (18-207)||(8444411-8444600)
chr8 (20-91)||(30998632-30998703)
chr8 (119-196)||(45103898-45103975)
[»] scaffold0074 (1 HSPs)
scaffold0074 (18-207)||(23547-23737)
[»] scaffold0041 (1 HSPs)
scaffold0041 (40-207)||(94650-94817)


Alignment Details
Target: scaffold0432 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 8854 - 9105
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  8854 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatctaaaagaggcctcgtttcatcaattactagataa 8953  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  8954 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctggatatt 9053  T
Q  218 tatctgtaatggggtggtttgtcatttgatctttttattttgttatcctttg 269  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  9054 tatctgtaatggagtggtttgtcatttgatctttttattttgttaccctttg 9105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 40973621 - 40973370
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40973621 ttaatctcatatggctttcttgtgtgtgggttatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataa 40973522  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||  | |||    
T  40973521 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctagttttactttttcctaccatttgtggtggttgaactttttaccttgtctgagcatt 40973422  T
Q  218 tatctgtaatggggtggtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40973421 tatctgtaatggggtggtttgtcatttgatctttttattttgttaccctttg 40973370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 25982528 - 25982277
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||||||||||||||||||  |||||||||||||||||||||||    
T  25982528 ttaatctcatatggctttcttctgtgtgggtgatttggatagaaagaaacgcccgtgtctttcatcaaaaagaggtctcgttccatcaattactagataa 25982429  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| |||||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||   ||||    
T  25982428 aattaaacttcaatcatactggtggctgaaagcgaaccgtccaagctttgttttttcctaccatttgtggtggttgaaccctttaccttgtctgaatatt 25982329  T
Q  218 tatctgtaatggggtggtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  25982328 tatctgtaatggggtagtttgtcatttgatctttttattttgttaccctttg 25982277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 19021150 - 19021339
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  19021150 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 19021249  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| |||| |||||  |||||||||||||||||||||||    
T  19021250 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctgccattcatggtggttgaaccctttaccttg 19021339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 22580744 - 22580552
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| |||||||| ||||||||| ||||||||||| | ||||| ||   |||||||||||| |||| | |  |||||||  ||||||| ||||||||    
T  22580744 ttaatcttatatggctatcttgtgtgcgggtgatttggcttgaaaggaatgttcgggtctttcaacaaatataaacttcgtttaatcaattgctagataa 22580645  T
Q  118 aattaaacttcaatcatactgg---tggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | | || |||||||| ||||||   ||||| ||||||||  ||| ||| ||||||||||||||||||| |||||||||||| | |||||||||    
T  22580644 agtgaagcttcaatcttactggtgctggctgaaagcgaatagtcctagttttactttttcctaccattcgtggtggttgaatcatttaccttg 22580552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 26369282 - 26369096
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  26369282 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 26369183  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| |||||| |||  |||||||| || | |||||||||    
T  26369182 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctactattcttggtggttaaatcttttaccttg 26369096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 22639319 - 22639508
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||| ||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  22639319 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 22639418  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || |||||||| |||||||| |||| |||||| | ||| |||  ||| ||||||||||  ||||||||||||| |||||||||    
T  22639419 agttaagctccaatcatattggtggctgaaagtgaaccgacctagttttgttttctcctaccattcatggtggttgaaccatttaccttg 22639508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 39566916 - 39567045
Alignment:
Q  20 aatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaa 119  Q
    |||||||| || || ||||||||||||||||| | ||  |||||||  ||||| ||  |||| |||||||||| ||| || |  |||||||| |||||||    
T  39566916 aatctcatttgactctcttgtgtgtgggtgatctagaatgaaagaat-actcgtgttcttcaacaaaaagaggattcattacgacaattacttgataaaa 39567014  T
Q  120 ttaaacttcaatcatactggtggctaaaagc 150  Q
    |||| || ||||| || ||||| ||||||||    
T  39567015 ttaagctgcaatcttattggtgactaaaagc 39567045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 18299795 - 18299544
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18299795 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaatcgctcgggtctttcatcaaaaagaggcctcgttccatcaattactagataa 18299696  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  18299695 aattaaacttcaatcatactggtggctgaaagggaaccgtcctagctttgctttttcctaccatttgtggtggttgaaccctttaccttttctgggtatt 18299596  T
Q  218 tatctgtaatggggtggtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||| ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  18299595 tatttgtaatggggtggtttgttgtttgatctttttattttgttaccctttg 18299544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 32575223 - 32575474
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  32575223 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataa 32575322  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  32575323 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggta-t 32575421  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||| ||||||    
T  32575422 tatctgtaatgaggtgattttgtcatttgatctttttattttgttaccctttg 32575474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 38141993 - 38142228
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||    
T  38141993 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattattagataa 38142092  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38142093 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 38142192  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    ||||||||||||||||  ||||||||||||||||||    
T  38142193 tatctgtaatggggtgattttgtcatttgatctttt 38142228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 15669445 - 15669697
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||    
T  15669445 ttaatctcatatggctttcttgtgtgtgggtgatttcgatagaaagaaacactcgggtctttcttcaaaaagaggccttgttcaatcaattactagataa 15669544  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15669545 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 15669644  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttattttgttatcctttg 269  Q
    |||||| |||||||||  ||||||||| ||| |||||||||||||| ||||||    
T  15669645 tatctgcaatggggtgattttgtcattcgatttttttattttgttaccctttg 15669697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 19323978 - 19324213
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19323978 ttaacctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacgctcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataa 19324077  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||| ||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19324078 aattaaacttcaatcataccggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 19324177  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    ||||||||||||||||  ||||||||||||| ||||    
T  19324178 tatctgtaatggggtgattttgtcatttgatatttt 19324213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 29126203 - 29125964
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  29126203 ttaatctcatatggctttcttgtgtg--ggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataa 29126106  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||| ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29126105 aattaaatttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 29126006  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttatttt 258  Q
    ||||| ||||||||||  |||| |||||||||||||||||||    
T  29126005 tatctataatggggtgattttgccatttgatctttttatttt 29125964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 29626667 - 29626902
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||| |||||    
T  29626667 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcggatctttcatcaaaaagaggcctcgttcattcaattacttgataa 29626766  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    |||||||||||||| |||||| ||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29626767 aattaaacttcaataatactgatggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 29626866  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    ||||||||||||||||  ||||||||||||||||||    
T  29626867 tatctgtaatggggtgattttgtcatttgatctttt 29626902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 41768098 - 41767908
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| | |||||  ||||  |  |  |||||||||| || ||    
T  41768098 ttaacctcatatggctttcttgtgtttgggtgatttggatcgaaagaaacactcggatctttaaccaaaagaaggccactcttgatcaattactcgacaa 41767999  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgt 208  Q
    ||||||||||||||| | ||| ||||| |||||||| |||| |||||||  ||| || ||  |||| | |||||||||||| |||||||||    
T  41767998 aattaaacttcaatctttctgatggctgaaagcgaatcgtcctagctttgttttctcttataattttttgtggttgaacccattaccttgt 41767908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 1031986 - 1032173
Alignment:
Q  20 aatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaa 119  Q
    ||||| || ||||| | ||||||||||||||| | | | ||||| ||| ||||  | ||||| |||||||| ||||| ||  |||||||| ||||||||     
T  1031986 aatcttatttggctatattgtgtgtgggtgatctagcttgaaaggaacgctcgaatatttcaccaaaaagaagcttcttttaatcaattattagataaag 1032085  T
Q  120 ttaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| |||||||||||||||||||| ||||||||||   |||| |||  ||| |||||| |||  ||||||||||||| |||||||||    
T  1032086 ttaagcttcaatcatactggtggctgaaagcgaaccacaatagttttgttttctcctactattcatggtggttgaaccatttaccttg 1032173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 5900079 - 5899867
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| ||||||| || ||||||||||||||| |||| ||| ||||||||| ||||||||||| | |||||| ||||  | ||  |||||||| | |  ||    
T  5900079 ttaacctcatatagcattcttgtgtgtgggtaatttagatcgaaagaaacgctcgggtctttaaccaaaaa-aggccacttttgatcaattattcgtcaa 5899981  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    |||||| |||||||| |||| || ||| |||||||| |||| |||||||| ||| || || | ||| ||||||||||| || | ||||||| |||| ||     
T  5899980 aattaagcttcaatcttactagttgctgaaagcgaatcgtcctagctttagtttctcttatcgtttttggtggttgaatccatcaccttgtttaggcatc 5899881  T
Q  218 tatctgtaatgggg 231  Q
    ||| ||||||||||    
T  5899880 tatatgtaatgggg 5899867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 19294478 - 19294656
Alignment:
Q  23 ctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaatta 122  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||| | |||||  |||   |  |  |||||||||| || |||||||    
T  19294478 ctcatatgactttcttgtgtttgggtgatttggattgaaagaaacgctcgggtctttaaccaaaagaaggacactcttgatcaattactcgacaaaatta 19294577  T
Q  123 aacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    ||| |||||| | ||  ||||| || ||||| |||| |||||||  ||| || || ||||| |||||||||||||||||    
T  19294578 aacgtcaatctttctaatggctgaatgcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccttt 19294656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 9942942 - 9942763
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || || || ||||||||||||||||| ||| | ||||||||  || |  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  9942942 ttaatcttatttgactatcttgtgtgtgggtgatctggcttgaaagaaatgcttgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 9942843  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacc 197  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||| ||||||||    
T  9942842 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtagttgaacc 9942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 40871632 - 40871465
Alignment:
Q  40 tgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatactgg 139  Q
    |||||||||||||||| | ||||| ||   |||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || |||||||| ||||||    
T  40871632 tgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactgg 40871533  T
Q  140 tggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||||| || || || |||| ||| |||  ||| ||||||||||  ||||||||||| | |||||||||    
T  40871532 tggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttg 40871465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 17194148 - 17194042
Alignment:
Q  102 atcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    ||||||| ||||||||| |||| ||||||||  |||||||||| ||||  || |||||||| |||  | | |||||||||| |||||||||||| |||||    
T  17194148 atcaattgctagataaagttaagcttcaatctcactggtggctgaaagaaaatcgtcatagttttgttctctcctaccattcgtggtggttgaatccttt 17194049  T
Q  202 accttgt 208  Q
    |||||||    
T  17194048 accttgt 17194042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 40858367 - 40858181
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||  ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  40858367 atcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 40858268  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||| ||||| ||||| || |||| ||| |||  ||| |||| |||||  | |||||| || ||| |||||||    
T  40858267 taagcttcaatcttactgatggctgaaagctaatcgtcctagttttgttttctccttccattcttagtggttaaatcctctaccttg 40858181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 7093676 - 7093911
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||    
T  7093676 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcaggtctttcatcaaaaagaggcctcgttcattcaattactagataa 7093775  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7093776 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtggtggttgaaccctttaccttgtctgggtatt 7093875  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    ||||||||||||||||  ||||||||||||||||||    
T  7093876 tatctgtaatggggtgattttgtcatttgatctttt 7093911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 24795444 - 24795199
Alignment:
Q  22 tctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgg-gtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  || | |||||||| ||||| | ||| ||||| ||||||||||   |||||||    
T  24795444 tctcatatggctttcttgtgtgtgggtgatttggattgaaagaaacgttcagagtctttcaccaaaa-gtggcctcgtttcatcaattac---ataaaat 24795349  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatttat 220  Q
    |||| ||||||||||||  ||||| || |||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  24795348 taaatttcaatcatactactggctgaatgcgaaccgtcctaactttattttttcctactatttgtggtggttgaaccctttaccttgtttgggtatttat 24795249  T
Q  221 ctgtaatggggtggtttgtcatttgatc--tttttattttgttatccttt 268  Q
     ||||||||   | |||||| || ||||  |||||||||||||| |||||    
T  24795248 atgtaatggatggttttgtctttagatctttttttattttgttagccttt 24795199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 8753266 - 8753076
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| |||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||| | |||||  ||||  |  |  |||||||||| || ||    
T  8753266 ttaacctcatatggctttcttgtgtttgggtgatctggatcgaaagaaacgctcgggtctttaaccaaaagaaggccactcttgatcaattactcgacaa 8753167  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgt 208  Q
    ||||||||||||||| | ||||||| | |||||||| |||| |||||||  ||| || || ||||| |||||||||||||| |||||||||    
T  8753166 aattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcatttttggtggttgaacccattaccttgt 8753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 24393664 - 24393853
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| |||||||||||||||||||||   ||||| ||  || |  ||||||| |||||||| ||||||||  |||||||  | |||||    
T  24393664 ttaatcttatttggctatcttgtgtgtgggtgatttggcatgaaaggaatgctggaatctttcaccaaaaagaagcttcgtttaatcaattgtttgataa 24393763  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| | |||||| ||||||||||| ||||  || |||| ||| |||  ||| |||||||||| |||||||||||| |||||||||||    
T  24393764 agttaagcctcaatcttactggtggctgaaagtaaatcgtcctagttttgttttctcctaccattcgtggtggttgaatcctttaccttg 24393853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 32737395 - 32737279
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| ||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||| ||||| ||  |  |||||||||| || ||    
T  32737395 ttaacctcatatggctatcttgtgtgtgagtgatttggattgaaagaaacgctcgggtctttcaccaaaaggaggcatcacttgatcaattactcgacaa 32737296  T
Q  118 aattaaacttcaatcat 134  Q
    |  ||||||||||||||    
T  32737295 aggtaaacttcaatcat 32737279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 30987275 - 30987204
Alignment:
Q  95 tcgttccatcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagcttt 166  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||    
T  30987275 tcgtttcatcaattactagataaaattaaacttcaatcatattggtggctgaaagcaaaccgtcctagcttt 30987204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 12912589 - 12912411
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||| ||| | ||||| ||   | || ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || ||||    
T  12912589 tggctatcatgtgtgtgggtgatatggcttgaaaggaatgattggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttc 12912490  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| ||||||||||| || || || |||| ||| |||  ||| ||||||||||  ||||||||||| |||||||||||    
T  12912489 aatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttg 12912411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 18972961 - 18972783
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattacta-gata 116  Q
    ||||||| || ||||| ||||||||||||||||||||| | ||||| ||  |||   ||||||| |||||||| ||||||||  ||||||| ||  ||||    
T  18972961 ttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctctaatctttcaccaaaaagaagcttcgtttaatcaattgctttgata 18972862  T
Q  117 aaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaa 195  Q
    || |||| |||||||| |||| |||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||||||    
T  18972861 aagttaagcttcaatcttactcgtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaa 18972783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 6029088 - 6029269
Alignment:
Q  26 atatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaac 125  Q
    |||||| | |||||||| |||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |||| |    
T  6029088 atatggttatcttgtgtttgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagc 6029187  T
Q  126 ttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||||||| || | |||||| |||||||| |||| ||| |||  ||| |||||||||   |||||||| || | |||||||||    
T  6029188 ttcaatcttattagtggctgaaagcgaatcgtcctagttttgttttctcctaccatacatggtggttaaatcatttaccttg 6029269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 40346133 - 40345898
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  40346133 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcattcaattactagataa 40346034  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  40346033 aattaaacttcaatcatactggtggctgaaagcgaactgtcatacctttgctttttcctaccatttgtggtggttgaaccatttaccttgtctgggtatt 40345934  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    ||||||||||||||||  ||||||||||||||||||    
T  40345933 tatctgtaatggggtgattttgtcatttgatctttt 40345898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 30598580 - 30598328
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||| |||||||||| |||||    
T  30598580 ttaatctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacacacaggtctttcatcaaaaagaggtatcgttcaatcaattactggataa 30598481  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||  | || |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  30598480 aattaaacttcaatcatactggtggctgaaagcgaaccaacctacctttgctttttcctaccatttgtggtggttgaaccatttaccttgtctgggtatt 30598381  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||| ||||||    
T  30598380 tatctataatggggtgattttgtcatttgatctttttattttgttaccctttg 30598328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 50771559 - 50771811
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||    
T  50771559 ttaatctcatatggctttcttgtgtgtgggtgatttggctagaaagaaacactcgagtctttcatcaaaaagaggtctcgttcaatcaattactagataa 50771658  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||| ||||||||||||||||||||| ||||||||||||  || ||||  |||||| ||| |||||| |||||||||||||||||| | ||| | ||||    
T  50771659 aattatacttcaatcatactggtggctgaaagcgaaccgttctacctttgttttttcgtacaatttgtagtggttgaaccctttaccctatctggatatt 50771758  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||||||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  50771759 tatctgtaatgggatgattttgtcatttgatcattttattttgttatcctttg 50771811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 36652081 - 36651892
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  36652081 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 36651982  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || |||||||| |||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  36651981 agttaagctccaatcatattggtggctgaaagcgaaccgacttagttttgttttctcctaccattcatggtggttgaaccctttaccttg 36651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 43499057 - 43499246
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| |||   ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  43499057 ttaatcttatttggctatcttgtgtgtgggtgatctggcgtgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 43499156  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  43499157 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 43499246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 9896846 - 9896657
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||| ||  ||||  | || || |||||||| ||||  ||  |||||||  |||||||    
T  9896846 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgaatattccaccaaaaagaagcttattttaatcaattgttagataa 9896747  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | ||||||||||||||||||||||||| ||||||||||| |  || |||  ||| ||||||||||  |||||||||||||||||||||||    
T  9896746 agttaaacttcaatcatactggtggctgaaagcgaaccgcccaagttttgttttctcctaccattcatggtggttgaaccctttaccttg 9896657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 42718330 - 42718519
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||  ||  |||||||  |||||||    
T  42718330 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataa 42718429  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||  |||  ||| ||||||||||  |||||||||||||||||||||||    
T  42718430 agttaagctccaatcatactggtggctgaaagcgaaccgacctaattttgttttctcctaccattcatggtggttgaaccctttaccttg 42718519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 7743332 - 7743527
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||| ||||||||||| ||| | ||||||||  ||||  | || || |||||||| ||||| ||  |||||||  || ||||    
T  7743332 ttaatcttatttggctatcttgcgtgtgggtgatctggcttgaaagaaatgctcgcatattccaccaaaaagaagcttcttttaatcaattgttaaataa 7743431  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctagg 213  Q
    | |||| |||||||||||||||||| | ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||| ||||    
T  7743432 agttaagcttcaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgtttagg 7743527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 40850567 - 40850753
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||  ||  ||||| | ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  40850567 atcttatatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcggatttttcaccaaacagaagcttcgattaatcaattgctagataaagt 40850666  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||||||||||||||  |||||||| || |||||||||||    
T  40850667 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttttcctaccattcttggtggttaaatcctttaccttg 40850753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 48640492 - 48640673
Alignment:
Q  26 atatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaac 125  Q
    |||||| | ||||||||||||||||||||| | ||||  ||  ||||||| ||||| |||| ||| |||||| |  ||||| | ||||||||| |||| |    
T  48640492 atatggttatcttgtgtgtgggtgatttggcttgaaatgaatgctcgggtttttcaccaaacagaagcttcgattaatcaactgctagataaagttaatc 48640591  T
Q  126 ttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||||||| ||||||||||| ||||| || |||||||| |||  ||| ||||||||||  |||||||| || | |||||||||    
T  48640592 ttcaatcttactggtggctgaaagcaaatcgtcatagttttgttttctcctaccattcttggtggttaaatcttttaccttg 48640673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 56024798 - 56024984
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | |||||||||||| |||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  56024798 atcttatatggttatcttgtgtgtggttgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 56024897  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  || || || || |||||||||||    
T  56024898 taagcttcaatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttgatgtttaaatcctttaccttg 56024984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 47590788 - 47590616
Alignment:
Q  35 tcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcat 134  Q
    ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| | |||| |  ||||||| ||||||||| |||| |||||||| |    
T  47590788 tcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagtttcgattaatcaattgctagataaagttaagcttcaatctt 47590689  T
Q  135 actggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || | |||||||||    
T  47590688 attggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcatttaccttg 47590616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 39060061 - 39059872
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || || || ||||||||||||||||| ||  | ||||| ||  ||||  | || || |||||||| ||||| ||  |||||||  |||||||    
T  39060061 ttaatcttatttgactatcttgtgtgtgggtgatctgacttgaaaggaatgctcgaatattccaccaaaaagaagcttcttttaatcaattgttagataa 39059962  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||||| ||||||||||||||||| || ||||||||||  |  || |||  ||| ||||||||||  ||||||||||||| |||||||||    
T  39059961 aattaagcttcaatcatactggtgactgaaagcgaaccacccaagttttgttttctcctaccattcatggtggttgaaccatttaccttg 39059872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 53585082 - 53584970
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||| |||||||||||||||||||  ||  ||| ||||||||| |||||||| |||  |||| ||||| | ||||| || ||||| || || ||    
T  53585082 ttaatctcatttggctttcttgtgtgtgggaaatcaggaaagaaagaaatactcgggttttttgtcaacaagagtcatcgttgcaacaattgcttgacaa 53584983  T
Q  118 aattaaacttcaa 130  Q
    |||||||||||||    
T  53584982 aattaaacttcaa 53584970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 37870987 - 37870809
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||| ||||||||| | ||||| ||   |||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | ||  |||    
T  37870987 tggctatcatgtgtgtgagtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagtttc 37870888  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| |||| |||||| || || || |||| | | |||  ||| ||||||||||  ||||||||||| |||||||||||    
T  37870887 aatcttactagtggctgaaggcaaatcgtcctggttttgttttctcctaccattcatggtggttgaatcctttaccttg 37870809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 23106938 - 23106851
Alignment:
Q  41 gtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||||||||||||| | ||||| ||  ||||| ||||||| |||||||| ||||| ||  ||||||| |||||||||||||| ||||    
T  23106938 gtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaaattaagcttc 23106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 20401518 - 20401577
Alignment:
Q  33 tttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagagg 92  Q
    |||| ||||| || ||||||||||| ||||||||  ||||||| ||||||||||||||||    
T  20401518 tttcatgtgtatgagtgatttggattgaaagaaatgctcgggtatttcatcaaaaagagg 20401577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 53459257 - 53459005
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  53459257 ttaatctcatatgactttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcctcgttcaatcaattactagataa 53459158  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||    
T  53459157 aattaaacttcaatcatactggtggctgaaagcgaaccgttctacctttactttttcctaccattggtggtggttgaaccctttacattgtttgggtatt 53459058  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttttattttgttatcctttg 269  Q
    ||||||||||||||||  |||| |||||||| ||||| |||||||| ||||||    
T  53459057 tatctgtaatggggtgattttgccatttgatttttttgttttgttaccctttg 53459005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 28432662 - 28432859
Alignment:
Q  37 ttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatac 136  Q
    ||||||||| ||||||||||| ||||||||  ||||||||||||||||| ||||| | |||   ||||||||||| || |||||||| ||| ||||||||    
T  28432662 ttgtgtgtgagtgatttggattgaaagaaatgctcgggtctttcatcaataagagacctcgcctcatcaattactcgacaaaattaagctttaatcatac 28432761  T
Q  137 tggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatttatctgtaatggggtgg 234  Q
    |||||||| |||| |||||||| ||||||| |||| || |||||||||| ||||||||| | |||||| ||| ||| ||| ||||||||||| |||||    
T  28432762 tggtggctgaaagagaaccgtcctagctttgctttctcttaccatttgtcgtggttgaatcatttaccatgtttagttatctatctgtaatgaggtgg 28432859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 26900397 - 26900528
Alignment:
Q  102 atcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    |||||||||||||||||||||||||||||||||| | ||| || ||||||||| ||| || |||| |||||||||| ||||| |||||||||||| ||||    
T  26900397 atcaattactagataaaattaaacttcaatcatattagtgactgaaagcgaactgtcctacctttgctttttcctatcatttatggtggttgaactcttt 26900496  T
Q  202 accttgtctaggtatttatctgtaatggggtg 233  Q
    | ||||||| | ||||||||||||||| ||||    
T  26900497 atcttgtctggatatttatctgtaatgaggtg 26900528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 10436778 - 10436592
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  10436778 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 10436679  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||||||||    
T  10436678 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 10436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 20406132 - 20406318
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||  | ||||| ||  ||||| | ||||| |||| ||| |||||| |  | ||||| ||||||||| |    
T  20406132 atcttatatggttatcttgtgtgtgggtgatttgacttgaaaggaatgctcggatttttcaccaaacagaagcttcgattaagcaattgctagataaagt 20406231  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| |||| |||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || | |||||||||    
T  20406232 taagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcttttaccttg 20406318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 14854611 - 14854439
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||||||||| ||||| || ||||| || ||||||||||  ||||||||  ||||||| ||| ||||||||||||  |||||    ||  |  | || ||    
T  14854611 ttaatctcatttggctctcgtgtgtatgagtgatttggagcgaaagaaatgctcgggtttttgatcaaaaagaggtctcgttaacacatctggttgacaa 14854512  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtgg 190  Q
    |||||||||||||||||| ||||| || |||||||| |||| ||  ||| ||||| | || ||||||||||||    
T  14854511 aattaaacttcaatcatattggtgtctgaaagcgaatcgtcctaatttttcttttacttatcatttgtggtgg 14854439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 20692344 - 20692219
Alignment:
Q  102 atcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    |||||||||| || |||||||| |||||||| ||||||||||| ||| |||| |||| || | ||  ||| || || ||||| |||||||  || || ||    
T  20692344 atcaattactcgacaaaattaaccttcaatcttactggtggctgaaaacgaatcgtcctaaccttgttttctcttatcatttttggtggtcaaatccatt 20692245  T
Q  202 accttgtctaggtatttatctgtaat 227  Q
    ||||||| |||| || ||| ||||||    
T  20692244 accttgtttaggcatctatatgtaat 20692219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 15759711 - 15759946
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  15759711 ttaatctcatatggctttcttgtgtgtaggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggtctcgttcaatcaattactagataa 15759810  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  15759811 aattaaacttcaatcatactggtggctgaaagcgaaccgtcctacctttgctttttcctaccatttgtgatggttgaaccctttaccttgtctgggtatt 15759910  T
Q  218 tatctgtaatggggtg-gtttgtcatttgatctttt 252  Q
    |||||||||||| |||  ||||||||||||||||||    
T  15759911 tatctgtaatggagtgattttgtcatttgatctttt 15759946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 20505398 - 20505584
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  20505398 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 20505497  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||||||||    
T  20505498 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 20505584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 26676652 - 26676838
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  26676652 atctaatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 26676751  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||||||||    
T  26676752 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 26676838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 31911898 - 31911684
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| |||||||| |||||||||||  | ||||| ||  ||| | ||||||| |||||||| | ||||||  ||||||| ||||||||    
T  31911898 ttaatcttatttggctatcttgtgtatgggtgatttgacttgaaaggaatgctcagatctttcaccaaaaagaagtttcgtttaatcaattgctagataa 31911799  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctaggtatt 217  Q
    | |||| |||||||| |||| |||||| |||| ||| |||||||| |||  ||| |||||||||| |||||||||||  | |||||||||  | || |||    
T  31911798 agttaagcttcaatcttactagtggctgaaagtgaatcgtcatagttttgttttctcctaccattcgtggtggttgagtcatttaccttgcttgggaatt 31911699  T
Q  218 tatctgtaatggggt 232  Q
    ||| |||||| ||||    
T  31911698 tatatgtaatagggt 31911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 33936187 - 33936376
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || | ||| ||||||||||||||||||||| | ||||| ||  ||||| ||||||| ||||| || | ||||||  ||||||| ||| ||||    
T  33936187 ttaatcttatttagctatcttgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaatgaagattcgtttaatcaattgctaaataa 33936286  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| |||||||| ||||| |  || |||||||| |||||||| |||  ||| || ||||||| |||||||| ||| |||||||||||    
T  33936287 agttaagcttcaatcttactgataactgaaagcgaatcgtcatagttttgttttctcttaccattcgtggtggtcgaatcctttaccttg 33936376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 46731822 - 46732008
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| || | |||||| ||||| |||| | | |||||| |  ||||||| ||||||||| |    
T  46731822 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaataatcgggtttttcaccaaacaaaagcttcgattaatcaattgctagataaagt 46731921  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| | |||||| || ||||| || |||| ||  |||  ||| ||||||||||| |||||||| || |||||||||||    
T  46731922 taagcttcaatcttgctggtgactgaaagcaaatcgtcctaattttgttttctcctaccatttttggtggttaaatcctttaccttg 46732008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 27007729 - 27007552
Alignment:
Q  26 atatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaac 125  Q
    ||||| || ||||||||||||||||||||| | ||||  ||   |||||||||||| ||||||||  |||||||  ||||||| ||||||| | |||||     
T  27007729 atatgactatcttgtgtgtgggtgatttggcttgaaatgaatgttcgggtctttcaccaaaaagaatcttcgtttaatcaattgctagatagagttaaat 27007630  T
Q  126 ttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttac 203  Q
    |||||||||| |||| ||| ||||||||   |  ||| |||  ||| |||||||||| |||||||||||| |||||||    
T  27007629 ttcaatcatattggtagctgaaagcgaatttttctagttttgttttctcctaccattcgtggtggttgaatcctttac 27007552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 33676843 - 33676656
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||| ||||||||| | ||||| ||  ||| ||| ||||| |||| ||| | |||| |  ||||||| ||||||||| |    
T  33676843 atcttatatggttatcttgtgtgtgagtgatttggcttgaaaggaatgctcaggtttttcaccaaacagaagtttcgattaatcaattgctagataaagt 33676744  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgt 208  Q
    ||| |||||||| |||| |||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || ||||||||||||    
T  33676743 taagcttcaatcttactagtggctgaaagcaaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttgt 33676656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 4532427 - 4532238
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || || || ||||||||||||||||| ||  | ||||| ||  ||||  | ||||| ||||||||  |||| ||  |||||||  |||||||    
T  4532427 ttaatcttatttgactatcttgtgtgtgggtgatctgacttgaaaggaatgctcgcatatttcaccaaaaagaaacttcttttaatcaattgttagataa 4532328  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| |  ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||| ||||||    
T  4532327 agttaagcaccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaacccttcaccttg 4532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 19228228 - 19228051
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||||||| | ||||| ||  ||||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || ||||    
T  19228228 tggctatcatgtgtgtgggtgatttggcttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttc 19228129  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttacctt 206  Q
    |||| ||  ||||||| || |  || |||| ||| |||  ||| ||||||||||  ||||||||||| ||||||||||    
T  19228128 aatcttatcggtggctgaaggtaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttacctt 19228051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 28756803 - 28756638
Alignment:
Q  43 gtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatactggtgg 142  Q
    ||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  |||||||  |||||||| |||| |||||||| |||||||||    
T  28756803 gtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgttagataaagttaagcttcaatcttactggtgg 28756704  T
Q  143 ctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgt 208  Q
    || ||||| || | || ||| |||  ||| ||||||||||  |||||||| || ||||||||||||    
T  28756703 ctgaaagcaaatcatcctagttttgttttctcctaccattcttggtggttaaatcctttaccttgt 28756638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 34549122 - 34549300
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||| ||| | ||||| ||   | || ||||| | |||||||| ||||| ||  ||||||| ||||||||| | || ||||    
T  34549122 tggctatcatgtgtgtgggtgatatggcttgaaaggaatgataggatctttaaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttc 34549221  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| ||||||||||| || || || |||| ||| |||  ||| ||||||||||  ||||||||||| |||||||||||    
T  34549222 aatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcctttaccttg 34549300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 42967038 - 42966908
Alignment:
Q  20 aatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaa 119  Q
    |||||||| || |||| |||||||||| |||| || |  |||||||| ||||  || ||||| |||||||||||||| || || |||||||| |||||||    
T  42967038 aatctcatttgactttgttgtgtgtggatgatctgcaatgaaagaaatactcatgtttttcaacaaaaagaggcttcattacaacaattacttgataaaa 42966939  T
Q  120 ttaaacttcaatcatactggtggctaaaagc 150  Q
    |||| |||||||| || |  |||||||||||    
T  42966938 ttaagcttcaatcttattaatggctaaaagc 42966908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 51534734 - 51534629
Alignment:
Q  102 atcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    |||||||  |||||||| |||| || |||||||| |||||||| ||||||||||| | ||| |||  ||| ||||||||||  ||||| |||||||||||    
T  51534734 atcaattgttagataaagttaagctccaatcatattggtggctgaaagcgaaccgacctagttttggtttctcctaccattcatggtgattgaacccttt 51534635  T
Q  202 accttg 207  Q
    ||||||    
T  51534634 accttg 51534629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 16541218 - 16541102
Alignment:
Q  25 catatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaag-aggcttcgttccatcaattactagataaaattaa 123  Q
    |||||||||||||||||||||||||||||||||  ||||| ||  | | |||||| | ||||||| |||| ||| |  |||||||||| ||||||| |||    
T  16541218 catatggctttcttgtgtgtgggtgatttggatcaaaagagacgttggagtcttt-aacaaaaagaaggcctcggttgatcaattactcgataaaactaa 16541120  T
Q  124 acttcaatcatactggtg 141  Q
     ||||||||||| |||||    
T  16541119 gcttcaatcatattggtg 16541102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 8164316 - 8164470
Alignment:
Q  83 caaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatt 182  Q
    ||||||||| |||| |  || |||||||  |||||||||||||| ||||| || |||||||||||| | || ||||  |  ||||||||||| || ||||    
T  8164316 caaaaagagccttcataacaacaattacatgataaaattaaactgcaatcttaatggtggctaaaaacaaatcgtccaaattttactttttcttatcatt 8164415  T
Q  183 tgtggtggttgaaccctttaccttgtctaggtatttatctgtaatggggtggttt 237  Q
    || ||||  | ||||| ||| ||||| | | |||| || ||||||| ||||||||    
T  8164416 tgcggtgtcttaacccattatcttgtttggatattcatttgtaatgaggtggttt 8164470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 36598383 - 36598351
Alignment:
Q  36 cttgtgtgtgggtgatttggatagaaagaaaca 68  Q
    ||||||||||||||||||||| |||||||||||    
T  36598383 cttgtgtgtgggtgatttggaaagaaagaaaca 36598351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 6764180 - 6764369
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  6764180 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 6764279  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| |||||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  6764280 agttaagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 6764369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 12410547 - 12410736
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  12410547 ttaatcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 12410646  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  12410647 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 12410736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 12422607 - 12422796
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  12422607 ttaatcttatttggctatcttgtgtgtgggtgatatggcttgaaagaaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 12422706  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  12422707 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 12422796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 37647725 - 37647914
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| || |||||||||||||| ||| | ||||||||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  37647725 ttaatcttatttggctatcctgtgtgtgggtgatctggcttgaaagaaatgctcgtatatttcaccaaaaagaagcttcttttaatcaattgttagataa 37647824  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  ||||||||| |||||||||||||    
T  37647825 agttaagctccaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttggaccctttaccttg 37647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 11031549 - 11031727
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||||||  | ||||| ||  ||||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || ||||    
T  11031549 tggctatcatgtgtgtgggtgatttgacttgaaaggaatgctcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttc 11031648  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| ||||||||||| || || || |||| ||  |||  ||| ||||||||||  ||||||||||| | |||||||||    
T  11031649 aatcttactggtggctgaaggcaaatcgtcctaattttgttttctcctaccattcatggtggttgaatcatttaccttg 11031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 3044174 - 3044279
Alignment:
Q  102 atcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaacccttt 201  Q
    ||||||| ||||||||| |||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||    
T  3044174 atcaattgctagataaagttaagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatccttt 3044273  T
Q  202 accttg 207  Q
    ||||||    
T  3044274 accttg 3044279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 2380963 - 2380782
Alignment:
Q  26 atatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaac 125  Q
    |||||| | ||||||||||||||||||||| | ||||| ||  ||| |   ||||| |||| ||| |||||  |  ||||||| ||||||||| ||||||    
T  2380963 atatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcagacttttcaccaaacagaagcttcaattaatcaattgctagataaagttaaac 2380864  T
Q  126 ttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||||||  ||||||||||| ||||| || |||| ||| ||   ||| ||||||||||  ||||| || || |||||||||||    
T  2380863 ttcaattttactggtggctgaaagcaaatcgtcctagtttcgttttctcctaccattcttggtgtttaaatcctttaccttg 2380782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 27271509 - 27271588
Alignment:
Q  128 caatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| |||||||||||| ||| ||||||||| ||| |||  ||| ||||||| ||  |||||||||||||||||||||||    
T  27271509 caattatactggtggctgaaaacgaaccgtcctagttttgttttctcctacctttcatggtggttgaaccctttaccttg 27271588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 9337 - 9526
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||| | ||||| ||  ||||  | ||||| |||||||| ||||  ||  |||||||  |||||||    
T  9337 ttaatcttatttggctatcttgtgtgtgggtgatctggcttgaaaggaatgctcgcatatttcaccaaaaagaagcttattttaatcaattgttagataa 9436  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| |||||||||||||||||||| ||||||||||| | ||| |||  ||| ||||||||||  |||||||||||||||||||||||    
T  9437 agttaagcttcaatcatactggtggctgaaagcgaaccgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttg 9526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 9932443 - 9932257
Alignment:
Q  21 atctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaat 120  Q
    |||| |||||| | ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |    
T  9932443 atcttatatggttatcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagt 9932344  T
Q  121 taaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||| |||||||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||||||||    
T  9932343 taagcttcaatcttactggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 9932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 45540134 - 45540264
Alignment:
Q  77 tttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcct 176  Q
    ||||| |||||||| ||||| ||  |||||||  |||||||| ||||||||||||||||||||||||| ||||||||||| | ||| |||  ||| ||||    
T  45540134 tttcaccaaaaagaagcttcttttaatcaattgttagataaagttaaacttcaatcatactggtggctgaaagcgaaccgccttagttttgttttctcct 45540233  T
Q  177 accatttgtggtggttgaaccctttaccttg 207  Q
    ||||||  |||||||||||||||||||||||    
T  45540234 accattcatggtggttgaaccctttaccttg 45540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 25582914 - 25582742
Alignment:
Q  35 tcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcat 134  Q
    ||||||||||||||||||||| | ||||| ||  ||||||| ||||| |||| ||| |||||| |  ||||||| ||||||||| |||| |||||||| |    
T  25582914 tcttgtgtgtgggtgatttggcttgaaaggaatgctcgggtttttcaccaaacagaagcttcgattaatcaattgctagataaagttaagcttcaatctt 25582815  T
Q  135 actggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||||||||| ||||| || |||| ||| |||  ||| ||||||||||  |||||||| || |||||||||||    
T  25582814 actggtggctgaaagctaatcgtcctagttttgttttctcctaccattcttggtggttaaatcctttaccttg 25582742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 13090116 - 13089938
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||||||| | ||||| ||   |||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || ||||    
T  13090116 tggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttc 13090017  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| ||||||||||| || || || |||| ||| |||  ||| ||||||||||| ||||||||||| |||||||||||    
T  13090016 aatcttactggtggctgaaggcaaatcgtcctagttttgttttctcctaccatttatggtggttgaatcctttaccttg 13089938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 33574449 - 33574259
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    |||| |||||||||||||||||| | |||||||| ||||| ||||||||| ||| || |||| | |||||  ||||| |  |  |||||||||| || ||    
T  33574449 ttaacctcatatggctttcttgtatttgggtgatctggatcgaaagaaacgctcaggcctttaaccaaaagaaggctactcttgatcaattactcgacaa 33574350  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgt 208  Q
    ||||||||||||||| | ||||||| | |||||||| |||| |||||||  ||| || || ||||| | |||||||||||| |||||||||    
T  33574349 aattaaacttcaatctttctggtggttgaaagcgaatcgtcctagctttgttttctcttatcattttttgtggttgaacccattaccttgt 33574259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 24503814 - 24504009
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||||||  | ||||| ||   |||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  24503814 ttaatcttatttggctatcttgtgtgtgggtgatttgtcttgaaagtaatgttcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 24503913  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttgtctagg 213  Q
    | |||| || ||||||||||||||| | ||||||||||| | ||| |||  ||| ||||||||||  |||||| ||||||||||||||||| ||||    
T  24503914 agttaagctccaatcatactggtggttgaaagcgaaccgacctagttttgttttctcctaccattcatggtggctgaaccctttaccttgtttagg 24504009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 4034630 - 4034452
Alignment:
Q  29 tggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttc 128  Q
    ||||| || |||||||||||||||||| | ||||| ||   || | ||||||| |||||||| ||||| ||  ||||||| || |||||| | || ||||    
T  4034630 tggctatcatgtgtgtgggtgatttggcttgaaaggaatgatcagatctttcaccaaaaagaagcttcttttaatcaattgctggataaagtcaagcttc 4034531  T
Q  129 aatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    |||| ||||||||||| ||||| || |||| ||| |||  ||| ||||||||||  ||||||||||| | |||||||||    
T  4034530 aatcttactggtggctgaaagcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttg 4034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 8444600 - 8444411
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataa 117  Q
    ||||||| || ||||| ||||||||||||||||| ||  | ||||| ||  ||||  | ||||| |||||||| ||||| ||  |||||||  |||||||    
T  8444600 ttaatcttatttggctatcttgtgtgtgggtgatctgccttgaaaggaatgctcgcatatttcaccaaaaagaagcttcttttaatcaattgttagataa 8444501  T
Q  118 aattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    | |||| || ||||||||||||||||| |||||||| || | ||| |||  ||| || |||||||  |||| ||||||| ||||||||||    
T  8444500 agttaagctccaatcatactggtggctgaaagcgaatcgacctagttttgttttctcttaccattcatggttgttgaactctttaccttg 8444411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 30998703 - 30998632
Alignment:
Q  20 aatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagag 91  Q
    |||||||| |||||  ||||||||||||| |||| ||  ||||||||  ||||||| |||||||||||||||    
T  30998703 aatctcatttggctgacttgtgtgtgggtaatttagagtgaaagaaatgctcgggtgtttcatcaaaaagag 30998632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 45103975 - 45103898
Alignment:
Q  119 attaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaac 196  Q
    |||||||||||||| | ||| ||| | |||||||| ||||||||||||  ||| || || ||||| ||||||||||||    
T  45103975 attaaacttcaatctttctgatggttgaaagcgaatcgtcatagctttgttttctcttatcatttttggtggttgaac 45103898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 23547 - 23737
Alignment:
Q  18 ttaatctcatatggctttcttgtgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattacta-gata 116  Q
    ||||||| || ||||| ||||||||||||||||||||| | ||||| ||  |||   ||||||| |||||||| ||||||||  ||||||| ||  ||||    
T  23547 ttaatcttatttggctatcttgtgtgtgggtgatttggcttgaaaggaatgctcaaatctttcaccaaaaagaagcttcgtttaatcaattgctttgata 23646  T
Q  117 aaattaaacttcaatcatactggtggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    || |||| ||||| || |||| |||||| ||||| || |||||||| |||  ||| |||||||||| |||||||||||| | |||||||||    
T  23647 aagttaagcttcattcttactcgtggctgaaagcaaatcgtcatagttttgttttctcctaccattcgtggtggttgaatcatttaccttg 23737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 94650 - 94817
Alignment:
Q  40 tgtgtgggtgatttggatagaaagaaacactcgggtctttcatcaaaaagaggcttcgttccatcaattactagataaaattaaacttcaatcatactgg 139  Q
    |||||||||||||||| | ||||| ||   |||| ||||||| |||||||| ||||| ||  ||||||| ||||||||| | || |||||||| ||||||    
T  94650 tgtgtgggtgatttggcttgaaaggaatgatcggatctttcaccaaaaagaagcttcttttaatcaattgctagataaagtcaagcttcaatcttactgg 94749  T
Q  140 tggctaaaagcgaaccgtcatagctttactttttcctaccatttgtggtggttgaaccctttaccttg 207  Q
    ||||| || || || |||| ||| |||  ||| ||||||||||  ||||||||||| | |||||||||    
T  94750 tggctgaaggcaaatcgtcctagttttgttttctcctaccattcatggtggttgaatcatttaccttg 94817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University