View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_high_17 (Length: 250)
Name: NF10559_high_17
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 6261848 - 6261605
Alignment:
| Q |
1 |
tcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctcct |
100 |
Q |
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| T |
6261848 |
tcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctcct |
6261749 |
T |
|
| Q |
101 |
taactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261748 |
taactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagc |
6261649 |
T |
|
| Q |
201 |
ttcctgcacccaccctccacctcccacgccaatcttcatctcac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6261648 |
ttcctgcacccaccctccacctcccacgccaatcttcatctcac |
6261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 6270860 - 6270699
Alignment:
| Q |
1 |
tcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctcct |
100 |
Q |
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|||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||||||| || ||||| | ||||| | |||||| ||| |
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| T |
6270860 |
tcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttcca |
6270761 |
T |
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| Q |
101 |
taactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
162 |
Q |
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|||| || |||||||| || |||||||||| ||||||| ||||||||| || |||||||| |
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| T |
6270760 |
taaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
6270699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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