View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_high_21 (Length: 240)
Name: NF10559_high_21
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_high_21 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 42578591 - 42578368
Alignment:
| Q |
17 |
agtatctgatataggagtaacaggagcaatttttctaagaggagtacttatttgaataacccaagaaaatgaacttctaagagtcgtgaaacaatcttat |
116 |
Q |
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| T |
42578591 |
agtatctgatataggagtaacaggagcaatttttctaagaggagtacttatttgaataacccaagaaaatgaacttctaagagtcgtgaaacaatcttat |
42578492 |
T |
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| Q |
117 |
ggatttatagggtgtaagaaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagttactatatggtttagagtgggatgaattaa |
216 |
Q |
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| T |
42578491 |
ggatttatagggtgtaagaaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagttactatatggtttagagtgggatgaattaa |
42578392 |
T |
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| Q |
217 |
gctgcaaaagagtggattgaattc |
240 |
Q |
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| T |
42578391 |
gctgcaaaagagtgggttgaattc |
42578368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 42574786 - 42574680
Alignment:
| Q |
135 |
aaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagtt-actatatggtttagagtgggatgaattaagctgcaaaagagtggat |
233 |
Q |
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| T |
42574786 |
aaagggatagcatgcaaactcaaatattttgaggaacttaaagtcaggaagttgactaaatggtttaaagtaggatgagttaagctgcaaaacagtgggt |
42574687 |
T |
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| Q |
234 |
tgaattc |
240 |
Q |
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| T |
42574686 |
tgcattc |
42574680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 42574905 - 42574855
Alignment:
| Q |
17 |
agtatctgatataggagtaacaggagcaatttttctaagaggagtacttat |
67 |
Q |
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| T |
42574905 |
agtatctgatatatgagtagcaggagcaattttcccaagaggagtacttat |
42574855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42571260 - 42571211
Alignment:
| Q |
17 |
agtatctgatataggagtaacaggagcaatttttctaagaggagtactta |
66 |
Q |
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| T |
42571260 |
agtatctgatatatgagtagcaggagcagttttcctaagaggagtactta |
42571211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 42609368 - 42609251
Alignment:
| Q |
70 |
gaataacccaagaaaatgaacttctaagagtcgtgaaacaatcttatggatttatagggtgtaagaaagggatagcatgcaaacccagatattttgagga |
169 |
Q |
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| T |
42609368 |
gaatagcccaagaaaatgaacttcttacagttactatacaatcttacggaatgaaagggtctaacaaagggaaagcttgcaaacccaaacattttgagga |
42609269 |
T |
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| Q |
170 |
aattaaagtcaggaagtt |
187 |
Q |
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| T |
42609268 |
acttgtagtcaggaagtt |
42609251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 27868965 - 27869065
Alignment:
| Q |
132 |
aagaaagggatagcatgcaaacccagatattttgaggaaattaaagtcaggaagtt-actatatggtttagagtgggatgaattaagctgcaaaagagtg |
230 |
Q |
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|||||||||||||||||||||||| || ||||| ||||| || |||||||||||| | || | ||||| ||| | |||| ||||||||||||| |||| |
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| T |
27868965 |
aagaaagggatagcatgcaaaccctgaaatttttaggaacttgtagtcaggaagttgattaaacagtttatagtagaatgagttaagctgcaaaacagtg |
27869064 |
T |
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| Q |
231 |
g |
231 |
Q |
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| T |
27869065 |
g |
27869065 |
T |
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