View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_high_24 (Length: 230)
Name: NF10559_high_24
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2377557 - 2377783
Alignment:
| Q |
1 |
gaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaagactcttgtgcagacactaataatagtacatatgatgag |
100 |
Q |
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| T |
2377557 |
gaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaaga---tcgtgcagacactaataatagtacatatgatgag |
2377653 |
T |
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| Q |
101 |
acattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaa |
200 |
Q |
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| T |
2377654 |
acattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaa |
2377753 |
T |
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| Q |
201 |
ttgagaaacttcatctaaaagtcatcaata |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2377754 |
ttgagaaacttcatctaaaagtcatcaata |
2377783 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 36766866 - 36766811
Alignment:
| Q |
105 |
tacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgt |
160 |
Q |
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|||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| |
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| T |
36766866 |
taccagaaattgaagcaagattttgtgatagaaatgtcctcataagagttcattgt |
36766811 |
T |
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