View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_high_27 (Length: 221)
Name: NF10559_high_27
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13122467 - 13122656
Alignment:
| Q |
1 |
ggatttgtcaacctgttcaaagacatcttcaactactccatatgtgtacttgacagatcggtctgccagataaaatgttattctttcatgtttaatggtt |
100 |
Q |
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| T |
13122467 |
ggatttgtcaacctgttccaagacatcttcaactactccatatgtgtacttgacagatcggtctgccagataaaatgttattctttc------------- |
13122553 |
T |
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| Q |
101 |
atcccttcaagatttttcatcatagaaagtggcaccaaaccaatactctctcctagatcggacaagcctttcctgtatagatagctttcctattgagcat |
200 |
Q |
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| T |
13122554 |
---ccttcaagatttttcatcatagaaagtggcttcaaaccaatactctctcctagatcggacaagcctttcctgtatagataactttcctattgagcat |
13122650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 13092525 - 13092711
Alignment:
| Q |
20 |
aagacatcttcaactactccatatgtgtacttgacagatcggtctgccagataaaatgttattctttcatgtttaatggttatcccttcaagatttttca |
119 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| | |||| |||||||||||||||| |
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| T |
13092525 |
aagacatcttcaattactccatatgggtacttgacagatcggtctgccagataaagaattattttttcaagtttaacgattattccttcaagatttttca |
13092624 |
T |
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| Q |
120 |
tcatagaaagtggcaccaaaccaatactctctcctagatcggacaagcctttcctgtatagatagctttcctattgagcatggaatg |
206 |
Q |
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| T |
13092625 |
tcataatgtgtgtcatcaaaacaatactctctcctagatcgcacaagccgttcccgtatagatagatttccaattgagcatggaatg |
13092711 |
T |
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