View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10559_high_3 (Length: 386)
Name: NF10559_high_3
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 132 - 368
Target Start/End: Original strand, 2671680 - 2671916
Alignment:
| Q |
132 |
ctctaaaccaggtaattctgatagaggtcagaaaacacggttatctgattcgaagttttcaaatagcagagaatattcagatgaaaggaacatggatgac |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2671680 |
ctctaaaccaggtaattctgatagaggtcagaaaacacggttatctgattcgaagttttcaaatagcagagaatattcagatgaaaggaacatggatgac |
2671779 |
T |
|
| Q |
232 |
cttgatttgccactttttgaattccatgtcatatcagatgctacaaactccttctctttagctaataaacttggagaaggaggctttggagctgtttaca |
331 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2671780 |
cttgatttgccactgtttgaattccatgtcatatcagatgctacaaactccttctctttagctaataaacttggagaaggaggctttggagctgtttaca |
2671879 |
T |
|
| Q |
332 |
gggtaaataaatttccattatttatatatacattagt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2671880 |
gggtaaataaatttccattatttatatatacattagt |
2671916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 2671547 - 2671656
Alignment:
| Q |
1 |
aagtgaataatagtcagagaggtacttgcacctaatgttctcttaaccatgctacctatgttttctttcttcactacattaggtgattctttttgcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2671547 |
aagtgaataatagtcagagaggtacttgcacctaatgttctcttaaccatgctacctatgttttctttcttcactacattaggtgattcttgttgcagct |
2671646 |
T |
|
| Q |
101 |
tcatatactg |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
2671647 |
tcatatactg |
2671656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University