View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10559_low_10 (Length: 407)
Name: NF10559_low_10
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 32566790 - 32567186
Alignment:
| Q |
1 |
gtaaccatggaaaaagaaaccaatggtgctgcttgaaagcaacaccttagaaaattatgaattgtaggttctgaaagggaacatcttctttgccctttgt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32566790 |
gtaaccatggacaaagaaaccaatggtgctgcttgaaagcaacaccttagaaaattatgaattgtaggttctgaaagggaacatcttctttgccctttgt |
32566889 |
T |
|
| Q |
101 |
gacaacagaattttcacaaacggtgctgatatattacaagttattcatgaattttggggtgaagcaaatagctgttttaagtccatatacacttgagact |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32566890 |
gacaacaggattttcacaaacggtgctgatatattacaagttattcatgaattttggggtgaagcaaatagctgttttaagtccatatacacttgagact |
32566989 |
T |
|
| Q |
201 |
ttcaccaccatattctacatcatgatcactgaggaaagaagnnnnnnnngaacctacaactacgaaatccaaagtccaaaccattacttcacagattgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32566990 |
ttcaccaccatattctacatcatgatcactgaggaaagaagaaaaaaaagaacctacaactacgaaatccaaagtccaaaccattacttcacagattgtt |
32567089 |
T |
|
| Q |
301 |
catatcagtttgaaggagttactgcacaatattgatccattaacatataccacatgcgtacagcaatttcaatagctaaaatggatggctatctctg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32567090 |
catatcagtttgaaggagttactgcacaatattgatccattaacatataccacatgcgtacagcaatttcaatagctaaaatggatggctatctctg |
32567186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1756937 - 1756901
Alignment:
| Q |
1 |
gtaaccatggaaaaagaaaccaatggtgctgcttgaa |
37 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1756937 |
gtaaccatggataaagaaaccaatggtgctgcttgaa |
1756901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University