View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10559_low_11 (Length: 407)

Name: NF10559_low_11
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10559_low_11
NF10559_low_11
[»] chr1 (5 HSPs)
chr1 (1-389)||(3451646-3452034)
chr1 (129-178)||(26462653-26462702)
chr1 (121-171)||(3148159-3148209)
chr1 (112-178)||(43328469-43328535)
chr1 (118-174)||(26777374-26777431)
[»] chr3 (9 HSPs)
chr3 (115-178)||(18267999-18268062)
chr3 (118-172)||(49636823-49636877)
chr3 (122-185)||(53791953-53792016)
chr3 (129-178)||(19323456-19323505)
chr3 (116-172)||(2988934-2988990)
chr3 (118-178)||(47542537-47542597)
chr3 (122-172)||(42748405-42748455)
chr3 (129-178)||(13725310-13725359)
chr3 (118-178)||(11093572-11093632)
[»] chr5 (11 HSPs)
chr5 (118-170)||(28322251-28322303)
chr5 (121-162)||(40141299-40141340)
chr5 (121-172)||(15086706-15086757)
chr5 (117-180)||(42370145-42370207)
chr5 (118-151)||(17535650-17535683)
chr5 (114-151)||(29200792-29200829)
chr5 (112-160)||(8281660-8281708)
chr5 (129-173)||(9878040-9878084)
chr5 (124-172)||(9895155-9895203)
chr5 (64-100)||(27253352-27253388)
chr5 (124-172)||(39828474-39828522)
[»] chr4 (10 HSPs)
chr4 (128-172)||(2796554-2796598)
chr4 (123-168)||(1386533-1386578)
chr4 (122-174)||(20119951-20120003)
chr4 (122-174)||(31277025-31277077)
chr4 (136-174)||(32369927-32369965)
chr4 (130-178)||(843150-843198)
chr4 (122-170)||(18783987-18784035)
chr4 (117-172)||(27131668-27131724)
chr4 (111-174)||(31638845-31638909)
chr4 (122-170)||(47040232-47040280)
[»] chr6 (12 HSPs)
chr6 (70-168)||(4012732-4012829)
chr6 (124-178)||(6294539-6294593)
chr6 (64-178)||(10760787-10760898)
chr6 (118-172)||(6284658-6284712)
chr6 (128-174)||(34625740-34625786)
chr6 (123-170)||(6074523-6074570)
chr6 (127-178)||(8923278-8923329)
chr6 (129-167)||(32577472-32577510)
chr6 (128-174)||(34598544-34598590)
chr6 (122-155)||(24821698-24821731)
chr6 (117-172)||(2468468-2468524)
chr6 (130-166)||(4945274-4945310)
[»] chr7 (11 HSPs)
chr7 (121-178)||(46179910-46179967)
chr7 (112-175)||(44172881-44172944)
chr7 (123-169)||(31837762-31837808)
chr7 (116-177)||(7139436-7139497)
chr7 (112-165)||(22636456-22636509)
chr7 (129-178)||(23948394-23948443)
chr7 (112-173)||(30013202-30013263)
chr7 (118-179)||(31808506-31808567)
chr7 (118-178)||(34399893-34399954)
chr7 (127-175)||(32855359-32855407)
chr7 (134-170)||(40826525-40826561)
[»] chr2 (4 HSPs)
chr2 (116-170)||(35198226-35198280)
chr2 (129-170)||(8765409-8765450)
chr2 (129-178)||(28369813-28369862)
chr2 (64-108)||(28045394-28045438)
[»] chr8 (3 HSPs)
chr8 (118-172)||(3066050-3066104)
chr8 (124-172)||(13342605-13342653)
chr8 (118-170)||(43806193-43806245)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 3452034 - 3451646
Alignment:
Q  1 atctctttcaaagttgatggtagtattttattttcttctactgctacacacttgtgaaaaattcctctgtagcaccgacacttgtgattgaagacgtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452034 atctctttcaaagttgatggtagtattttattttcttctactgctacacacttgtgaaaaattcctctgtagcaccgacacttgtgattgaagacgtatc 3451935  T
Q  101 cggtgtccatcacaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgccgtgtctgtgtcggtacttca 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  3451934 cggtgtccatcacaccgacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgtcgtgtccgtgtcggtacttca 3451835  T
Q  201 tggaaaatttcaatcttttcggctattccaagtacaccgaccctttttccatattcattcgctacacacttggaacatttaaggaaggagtagcttaaga 300  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3451834 tggaaaatttcaatgctttcggctattccaagtacaccgaccctttttccatattcattcgttacacacttggaacatttaaggaaggagtagcttaaga 3451735  T
Q  301 gctcagcctaacaactaaaaacagaattacaactaatataactaactaaccaacgatgagctatatcagttaatactatatccctctca 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451734 gctcagcctaacaactaaaaacagaattacaactaatataactaactaaccaacgatgagctatatcagttaatactatatccctctca 3451646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 26462653 - 26462702
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||||||||| ||||||||| ||| |||||| |||||||||||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaattattatcagtg 26462702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 3148209 - 3148159
Alignment:
Q  121 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatt 171  Q
    ||||||| ||||||||||||| ||| ||||||||  |||||||||||||||    
T  3148209 cgacaccgacacatgtgattatattaaattaatttattttctcaaattatt 3148159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 43328535 - 43328469
Alignment:
Q  112 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||||||||||   ||||||||| ||| ||| ||||| ||| ||||||||||||||||| ||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtg 43328469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 26777374 - 26777431
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattc-gttttctcaaattattatc 174  Q
    |||||||||| ||||||||||||| |||||||||| ||  |||| |||||||||||||    
T  26777374 acacgacacccacacatgtgattacattcaattaagtcatttttttcaaattattatc 26777431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 18267999 - 18268062
Alignment:
Q  115 ccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||| ||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  18267999 ccaacacaacaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtg 18268062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 49636823 - 49636877
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    ||||||||||| | |||||||||| ||||||||||||| ||||||||||||||||    
T  49636823 acacgacaccagcgcatgtgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 53791953 - 53792016
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgccgtgtc 185  Q
    |||||| ||||||||| ||| ||||||||| | | ||||||||||||||||| |||||||||||    
T  53791953 gacaccgacacatgtggttacattcaattattcctttttctcaaattattattagtgccgtgtc 53792016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 19323456 - 19323505
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    |||||||||||||||||||||||  || ||||||||||||| ||||||||    
T  19323456 acacatgtgattaaattcaattatgtcattttctcaaattactatcagtg 19323505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 2988990 - 2988934
Alignment:
Q  116 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||||||||||||||||||| ||||||||||| ||| ||  |||| |||||||||||    
T  2988990 caacacgacaccaacacatgcgattaaattcatttattttattttgtcaaattatta 2988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 47542597 - 47542537
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    |||| ||||| ||||||||||||| |||||| || ||| |||||||||||||||| |||||    
T  47542597 acacaacaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtg 47542537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 42748455 - 42748405
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    ||||||||||||||||||||||||||| || |  ||||||||| |||||||    
T  42748455 gacaccaacacatgtgattaaattcaactattctgttttctcagattatta 42748405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 13725359 - 13725310
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||||||||  ||||||||||||| |||||||| ||||| |||||||    
T  13725359 acacatgtgatttcattcaattaattcattttctcatattatcatcagtg 13725310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 11093632 - 11093572
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||||||||||||| ||||||  || |||||  || |||| |||||||||||||||||    
T  11093632 acacgacaccaacacatctgattactttgaattatgtcattttttcaaattattatcagtg 11093572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 28322303 - 28322251
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  28322303 acactacaccaacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 40141340 - 40141299
Alignment:
Q  121 cgacaccaacacatgtgattaaattcaattaattcgttttct 162  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  40141340 cgacaccaacacatgtggttaaattcaattaattcattttct 40141299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 15086757 - 15086706
Alignment:
Q  121 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||||||||||||||||||||  ||||| ||||||  |||||||||||||||    
T  15086757 cgacaccaacacatgtgattacgttcaaataattcactttctcaaattatta 15086706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 42370145 - 42370207
Alignment:
Q  117 aacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgcc 180  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||| ||||||| ||| |||||||    
T  42370145 aacacgacaccaacacatgtgattacatttaatcaattcatttt-tcaaatttttaccagtgcc 42370207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 17535683 - 17535650
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaatta 151  Q
    |||||||||||||||||||||||| |||||||||    
T  17535683 acacgacaccaacacatgtgattatattcaatta 17535650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 29200792 - 29200829
Alignment:
Q  114 accaacacgacaccaacacatgtgattaaattcaatta 151  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  29200792 accaaaacgacaccaacacatgtgattacattcaatta 29200829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 8281708 - 8281660
Alignment:
Q  112 acaccaacacgacaccaacacatgtgattaaattcaattaattcgtttt 160  Q
    |||||||||||| ||| |||||||| |||| ||||||||||||| ||||    
T  8281708 acaccaacacgatacctacacatgtaattacattcaattaattcatttt 8281660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 9878040 - 9878084
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattat 173  Q
    ||||| ||||||| ||||||||||||| | |||||||||||||||    
T  9878040 acacaagtgattacattcaattaattcatattctcaaattattat 9878084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 9895203 - 9895155
Alignment:
Q  124 caccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    ||||||||||||||||||  ||||| |||||  ||||||||||||||||    
T  9895203 caccaacacatgtgattacgttcaaataatttattttctcaaattatta 9895155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 27253388 - 27253352
Alignment:
Q  64 cctctgtagcaccgacacttgtgattgaagacgtatc 100  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  27253388 cctctgtagcaccgacacttttgattgaagccgtatc 27253352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 39828522 - 39828474
Alignment:
Q  124 caccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||||||||||||| ||| ||||||||| ||| | ||||||||||||||    
T  39828522 caccaacacatgtggttacattcaattatttcatattctcaaattatta 39828474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2796598 - 2796554
Alignment:
Q  128 aacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  2796598 aacacatgtgattaaattcaattaattcattttctcaaattatta 2796554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 1386533 - 1386578
Alignment:
Q  123 acaccaacacatgtgattaaattcaattaattcgttttctcaaatt 168  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||    
T  1386533 acaccaacacatgtgattatattcaattaattacttttctcaaatt 1386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 20120003 - 20119951
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatc 174  Q
    ||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||||    
T  20120003 gacactaacacatgtgattacattaaattatttcattttctcaaattattatc 20119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 31277025 - 31277077
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatc 174  Q
    |||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||    
T  31277025 gacaccaaaatatgtgattacattcaattagttcattttctcaaattattatc 31277077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 32369927 - 32369965
Alignment:
Q  136 tgattaaattcaattaattcgttttctcaaattattatc 174  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattattatc 32369965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 843150 - 843198
Alignment:
Q  130 cacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||||||||  ||||| |||||| |||||||||||||||| |||||    
T  843150 cacatgtgattacgttcaaataattcattttctcaaattattaccagtg 843198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 18784035 - 18783987
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    ||||||||||| ||| |||| ||||||||| ||| ||||||||||||||    
T  18784035 gacaccaacacgtgtaattacattcaattacttcattttctcaaattat 18783987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 27131668 - 27131724
Alignment:
Q  117 aacacgacaccaacacatgtgattaaattcaattaatt-cgttttctcaaattatta 172  Q
    ||||||||||||||||||||| ||| ||||||||| || | |||||| |||||||||    
T  27131668 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 27131724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 31638845 - 31638909
Alignment:
Q  111 cacaccaacacgacaccaacacatgtgattaaattc-aattaattcgttttctcaaattattatc 174  Q
    |||| |||||||||||| ||| ||| ||||| |||| ||||||||| ||||||||| ||||||||    
T  31638845 cacatcaacacgacaccgacatatgcgattatattcaaattaattcattttctcaagttattatc 31638909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 47040232 - 47040280
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    |||||| ||||||||||||| || || ||||||| ||||||||||||||    
T  47040232 gacaccgacacatgtgattatatccagttaattcattttctcaaattat 47040280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 4012829 - 4012732
Alignment:
Q  70 tagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaatt 168  Q
    ||||||||||||||  |||  ||||||| || |||||||| ||||  || ||||||| |||||||||||||| ||||||||||||| |||| |||||||    
T  4012829 tagcaccgacacttccgatgaaagacgtgtctggtgtccaacacatgaa-acgacacaaacacatgtgattatattcaattaattcattttttcaaatt 4012732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 6294539 - 6294593
Alignment:
Q  124 caccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    |||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||    
T  6294539 caccaacacatgcgattgcattcaattaattcattttctcaaattattatcagtg 6294593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 10760787 - 10760898
Alignment:
Q  64 cctctgtagcaccgacacttgtgattgaagacgtatccggtgtccatcacaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctc 163  Q
    |||||||||||||||||| | |||| ||||  || ||||| ||||   |||||||||||||| | |||| |||||||| |||||| ||  || |||||||    
T  10760787 cctctgtagcaccgacacatctgatggaaggggtgtccggcgtccg--acaccaacacgacatcgacacgtgtgattacattcaa-tatgtcattttctc 10760883  T
Q  164 aaattattatcagtg 178  Q
    |||||||||||||||    
T  10760884 aaattattatcagtg 10760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 6284658 - 6284712
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||| |||| ||||||||||||||||||||||||  || ||||||||||||||||    
T  6284658 acactacactaacacatgtgattaaattcaattatgtcattttctcaaattatta 6284712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 34625786 - 34625740
Alignment:
Q  128 aacacatgtgattaaattcaattaattcgttttctcaaattattatc 174  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  34625786 aacatatgtgattacattcaattaattcattttctcaaattattatc 34625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 6074570 - 6074523
Alignment:
Q  123 acaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    |||||||||||||||||||  ||||| |||||| ||||||||||||||    
T  6074570 acaccaacacatgtgattacgttcaactaattcattttctcaaattat 6074523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 8923329 - 8923278
Alignment:
Q  127 caacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||| ||||||| |||||| ||| ||||||||||||||||||| |||||    
T  8923329 caacacacgtgattacattcaaataactcgttttctcaaattattaccagtg 8923278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 32577472 - 32577510
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaat 167  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  32577472 acacatgtgattacattcaattaattcattttctcaaat 32577510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 34598590 - 34598544
Alignment:
Q  128 aacacatgtgattaaattcaattaattcgttttctcaaattattatc 174  Q
    |||| ||||||||| || |||||||||| ||||||||||||||||||    
T  34598590 aacatatgtgattacatccaattaattcattttctcaaattattatc 34598544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 24821731 - 24821698
Alignment:
Q  122 gacaccaacacatgtgattaaattcaattaattc 155  Q
    |||||||||||||||||||| |||||||||||||    
T  24821731 gacaccaacacatgtgattacattcaattaattc 24821698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 2468468 - 2468524
Alignment:
Q  117 aacacgacaccaacacatgtgattaaattcaattaatt-cgttttctcaaattatta 172  Q
    ||||||||||||||||||||| ||| ||||||||| || | |||||| |||||||||    
T  2468468 aacacgacaccaacacatgtggttacattcaattacttccattttcttaaattatta 2468524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 4945310 - 4945274
Alignment:
Q  130 cacatgtgattaaattcaattaattcgttttctcaaa 166  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  4945310 cacatgtgattacattcaattaattcattttctcaaa 4945274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 46179910 - 46179967
Alignment:
Q  121 cgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||| ||||||||||||    
T  46179910 cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtg 46179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  112 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatca 175  Q
    |||||||||| |||| |||||||||||||| ||| |||||  || |||||||||||||||||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 31837808 - 31837762
Alignment:
Q  123 acaccaacacatgtgattaaattcaattaattcgttttctcaaatta 169  Q
    ||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  31837808 acaccaacacatgagattacattcaattatttcattttctcaaatta 31837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 7139436 - 7139497
Alignment:
Q  116 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagt 177  Q
    |||||||||||| |||||||| | |  ||||||||||||| |||||||||| ||||| ||||    
T  7139436 caacacgacacctacacatgttactgcattcaattaattcattttctcaaaatattaccagt 7139497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 22636509 - 22636456
Alignment:
Q  112 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaa 165  Q
    ||||| ||||||||||||||||| |||||| ||||||||| || ||||| ||||    
T  22636509 acaccgacacgacaccaacacatttgattacattcaattattttgttttatcaa 22636456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 23948443 - 23948394
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    |||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  23948443 acacatatgattacattcaattaattgattttttcaaattattatcagtg 23948394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 30013263 - 30013202
Alignment:
Q  112 acaccaacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattat 173  Q
    ||||||||| ||||| |||||||||||||| ||| |||||  || |||||||| ||||||||    
T  30013263 acaccaacatgacacaaacacatgtgattatattgaattacgtcattttctcatattattat 30013202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 31808506 - 31808567
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattattatcagtgc 179  Q
    |||||||||||||||||||||||| ||| | ||   || |||||||||||||||||| ||||    
T  31808506 acacgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtgc 31808567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 34399893 - 34399954
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaatt-cgttttctcaaattattatcagtg 178  Q
    |||||||||| |||||| |||||| ||||||| | || | ||||||||||||||||||||||    
T  34399893 acacgacacccacacatatgattacattcaatcatttacattttctcaaattattatcagtg 34399954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 32855407 - 32855359
Alignment:
Q  127 caacacatgtgattaaattcaattaattcgttttctcaaattattatca 175  Q
    |||||||| |||||| |||||||||| || |||||| ||||||||||||    
T  32855407 caacacatatgattacattcaattaaatcattttcttaaattattatca 32855359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 40826561 - 40826525
Alignment:
Q  134 tgtgattaaattcaattaattcgttttctcaaattat 170  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  40826561 tgtgattatattcaattaattcattttctcaaattat 40826525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 35198226 - 35198280
Alignment:
Q  116 caacacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    ||||||||||||  |||||||||||| ||||||||||||| |||||| |||||||    
T  35198226 caacacgacaccgtcacatgtgattacattcaattaattcattttcttaaattat 35198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 8765409 - 8765450
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    ||||||||| ||| |||||||||||||||||||| |||||||    
T  8765409 acacatgtgcttacattcaattaattcgttttcttaaattat 8765450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 28369813 - 28369862
Alignment:
Q  129 acacatgtgattaaattcaattaattcgttttctcaaattattatcagtg 178  Q
    |||||||| |||| ||| | ||||||| ||||||||||||||||||||||    
T  28369813 acacatgttattacatttatttaattcattttctcaaattattatcagtg 28369862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 28045394 - 28045438
Alignment:
Q  64 cctctgtagcaccgacacttgtgattgaagacgtatccggtgtcc 108  Q
    |||||||||||||||||||| |||| |||||| |||| |||||||    
T  28045394 cctctgtagcaccgacacttctgatggaagacatatctggtgtcc 28045438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 3066104 - 3066050
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    |||||| ||| |||||||| |||| ||||||||||| | ||||||||||||||||    
T  3066104 acacgataccgacacatgttattacattcaattaatccattttctcaaattatta 3066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 13342653 - 13342605
Alignment:
Q  124 caccaacacatgtgattaaattcaattaattcgttttctcaaattatta 172  Q
    ||||||||||||||||| |||| ||||| ||| |||| |||||||||||    
T  13342653 caccaacacatgtgattgaatttaattatttcattttatcaaattatta 13342605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 43806193 - 43806245
Alignment:
Q  118 acacgacaccaacacatgtgattaaattcaattaattcgttttctcaaattat 170  Q
    ||||| ||| |||| ||||||||| ||||||||||||| |||||| |||||||    
T  43806193 acacgccactaacatatgtgattatattcaattaattcattttcttaaattat 43806245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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