View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_12 (Length: 402)
Name: NF10559_low_12
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 52810717 - 52811094
Alignment:
| Q |
9 |
agcagagatcaatgatataaagaaacccattgtccacttccctgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttgagggaa |
108 |
Q |
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| T |
52810717 |
agcagagatcaatgatataaagaaacccattgtccacttccccgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttgagggaa |
52810816 |
T |
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| Q |
109 |
aagtaaaaataacagaagaaagctacttttaaactcctctcttttggattcctctcatcatattggtcagctccaaaggttgctaaggttggttggtgtc |
208 |
Q |
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| T |
52810817 |
aagtaaaaataacagaagaaagctacttttaaactcctctcttttggattcctctcatcatattggtcagctccaaaggttgctaaggttggttggtgtc |
52810916 |
T |
|
| Q |
209 |
ctccataaccaaatgcaacaagatatatagaaaagtagaaaatgctaactccaattgatgatggcttacaaggaatatggccattaccacatccacttgg |
308 |
Q |
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| T |
52810917 |
ctccataaccaaatgcaacaagatatatagaaaagtagaaaatgctaactccaattgatgatggcttacaaggaatatggccattaccacatccacttgg |
52811016 |
T |
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| Q |
309 |
gttgatcaaaaaacgccatgatgacaaacaggacagtgccaatccctattcaatttaattaataagaaaaatacatat |
386 |
Q |
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| T |
52811017 |
gttgatcaaaaaacgccatgatgacaaacatgacagtgccaatccctattcaatttaatttataagaaaaatacatat |
52811094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 3804004 - 3804077
Alignment:
| Q |
163 |
tcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatatat |
236 |
Q |
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| T |
3804004 |
tcatcaaattgatcagctccaaaggttgctaaggtaggttgatgccctccatatccaaatgcaaccatatatat |
3804077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 396650 - 396577
Alignment:
| Q |
163 |
tcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatatat |
236 |
Q |
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| T |
396650 |
tcatcaaattgatcagctccaaatgttgctaaggtaggttgatgccctccatatccaaatgcaaccaaatatat |
396577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 358
Target Start/End: Original strand, 9749503 - 9749538
Alignment:
| Q |
323 |
gccatgatgacaaacaggacagtgccaatccctatt |
358 |
Q |
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| T |
9749503 |
gccatgatgacaaacagaacagtgccaatccctatt |
9749538 |
T |
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