View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_13 (Length: 391)
Name: NF10559_low_13
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 4189308 - 4189691
Alignment:
| Q |
1 |
aaaatagaagctagaaaggaaaacaaaataagatacacgattgcatatctttgtgacttggtctacatgaagttgaatcaagaactctcaactttgttta |
100 |
Q |
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| T |
4189308 |
aaaatagaagctagaaaggaaaacaaaataagatacacgattgcatatctttgtgacttggtctacatgaagttgaatcaagaactctcaactttgttta |
4189407 |
T |
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| Q |
101 |
tgcaagaagcagtgcagcaccggcaaagaatggtagcatgaaaaagctgcttctgcgaacaaccgcgttgcttggacttgaagcaactgggttatcagac |
200 |
Q |
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| T |
4189408 |
tgcaagaagcagtgcagcaccagcaaagaatggtagcatgaaaaagctgcttctgcgaacaaccgcgttgcttggacttgaagcaactggattatcagac |
4189507 |
T |
|
| Q |
201 |
attgattctccggtggaaggtgacggtgaagaagctggagatggtgaagcagcagtagggaaaggtgggctcatacttggactcatgttcatgcttgggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189508 |
attgattctccggtggaaggtgacggtgaagaagctggagatggtgaagcatcagtagggaaaggtgggctcatacttggactcatgttcatgcttgggc |
4189607 |
T |
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| Q |
301 |
tcatgctc------------gggctttctggtggcaatgattcaggggaggaggcaggtgaaggagtgtgcagcatgatgggtc |
372 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189608 |
tcatgctcgggctctggcttgggctttctggtggcaatgattcaggggaggaggcaggtgaaggagtgtgcagcatgatgggtc |
4189691 |
T |
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