View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_14 (Length: 389)
Name: NF10559_low_14
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 46640466 - 46640112
Alignment:
| Q |
19 |
gtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtctattaaaaga |
118 |
Q |
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| T |
46640466 |
gtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtctgttaaaaga |
46640367 |
T |
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| Q |
119 |
ccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640366 |
ccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaaga |
46640267 |
T |
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| Q |
219 |
tacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640266 |
tacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggc |
46640167 |
T |
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| Q |
319 |
tttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatg |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640166 |
tttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatg |
46640112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 46642758 - 46642404
Alignment:
| Q |
19 |
gtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtctattaaaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
46642758 |
gtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtctgttaaaaga |
46642659 |
T |
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| Q |
119 |
ccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46642658 |
ccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaatga |
46642559 |
T |
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| Q |
219 |
tacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642558 |
tacctgtgtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggc |
46642459 |
T |
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| Q |
319 |
tttggtgagtcttgggtttagtggtggtagagattggtgtgatgaggggttgatg |
373 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46642458 |
tttggtgagtcttggatttagtggtggtagagattggtgtgatgaggggttgatg |
46642404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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