View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_16 (Length: 386)
Name: NF10559_low_16
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 371
Target Start/End: Complemental strand, 51035848 - 51035503
Alignment:
| Q |
11 |
caaaggaaaacagtaagtgcactgatcatattatatagtcttataaattgttacaattccattattctaattctttctatgatgtgtgtttttatgccat |
110 |
Q |
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| T |
51035848 |
caaaggaaaacagtaagtgcactgatcatattatatagtcttataaattgttacaattccattattctaattctttctatgatgtgtgtttttatgccat |
51035749 |
T |
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| Q |
111 |
gcagtggaggagcctgtgaagttcgaaggaaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgc |
210 |
Q |
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| T |
51035748 |
gcagtggaggagcctatgaagttcgaaggaaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgc |
51035649 |
T |
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| Q |
211 |
tattcaagaatctggcttgtctaagataatccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacattatatat |
310 |
Q |
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| T |
51035648 |
tattcaagaatctggcttgtctaagatactccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaacaaaatatgtaagacatt------ |
51035555 |
T |
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| Q |
311 |
gaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttg |
371 |
Q |
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| T |
51035554 |
---------aacttccattgagagttcaagttgttggtctaattaaaataattattgtttg |
51035503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 287
Target Start/End: Complemental strand, 51031532 - 51031381
Alignment:
| Q |
136 |
aaggaaattattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaag |
235 |
Q |
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| T |
51031532 |
aaggaaattattgttggaagcccttgccaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaa |
51031433 |
T |
|
| Q |
236 |
ataatccatcttgctgatggaacaaccatcaaaactaaggtaattaaacaac |
287 |
Q |
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| T |
51031432 |
atactacatcttgttgatggaacaaccatcaaaaccaaggtaattaaacaac |
51031381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 143 - 287
Target Start/End: Complemental strand, 51064273 - 51064129
Alignment:
| Q |
143 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
242 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| | |||||||| || || || ||| | | |
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| T |
51064273 |
ttattgttggaagcccttgcaaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaaatactac |
51064174 |
T |
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| Q |
243 |
atcttgctgatggaacaaccatcaaaactaaggtaattaaacaac |
287 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
51064173 |
atcttgttgatggaacaaccatcaaaaccaaggtaattaaacaac |
51064129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 40616515 - 40616650
Alignment:
| Q |
143 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
242 |
Q |
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|||||||||||||||||||| | ||| ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||| || | ||||||| ||| |
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| T |
40616515 |
ttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatactcc |
40616614 |
T |
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| Q |
243 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
278 |
Q |
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||||||| |||||||||||||||||||| ||||||| |
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| T |
40616615 |
atcttgccgatggaacaaccatcaaaaccaaggtaa |
40616650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 51069676 - 51069541
Alignment:
| Q |
143 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagataatcc |
242 |
Q |
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|
||||||||||||||||||| |||||||||||| | | |||||||||| ||||||||||| || |||||||| | |||||||| || | ||| ||| | | |
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| T |
51069676 |
ttattgttggaagcccttggcaatgaacttccaaatagcaccattaggtacatgtcaaaagtcgttgctatagaggaatctggattctttaaaatactac |
51069577 |
T |
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| Q |
243 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
278 |
Q |
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|||||| ||||||||||||||||||||| ||||||| |
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| T |
51069576 |
atcttgttgatggaacaaccatcaaaacaaaggtaa |
51069541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 51031330 - 51031262
Alignment:
| Q |
303 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttg |
371 |
Q |
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| T |
51031330 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttg |
51031262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 51064082 - 51064014
Alignment:
| Q |
303 |
ttatatatgaagagaaaaacttccattgagagttcaagttgttggtctaattaaaataattattgtttg |
371 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51064082 |
ttatatatgaagataaaaacttcctttgagagttcaagttgttagtctaattaaaataattattgtttg |
51064014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 51064518 - 51064477
Alignment:
| Q |
11 |
caaaggaaaacagtaagtgcactgatcatattatatagtctt |
52 |
Q |
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| T |
51064518 |
caaaggaaagtagtaagtgcactgaacatattatatagtctt |
51064477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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