View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_17 (Length: 375)
Name: NF10559_low_17
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 41505163 - 41505537
Alignment:
| Q |
1 |
gctaggggcagcaagaccattcattatggctaattgttgtatatgtacctcttcagttgtgaatcttttttcaataatgtttttcacatcatgagtgact |
100 |
Q |
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| T |
41505163 |
gctaggggcagcaagaccattcattatggctaattgttgtatatgtacctcttcagttgtgaatcttttctcaataatgtttttcacatcatgagttact |
41505262 |
T |
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| Q |
101 |
atgttctttattgtatggataatctcatccgtattcatgggatttaaagaagagaaaatgtctttgaaatagtaggtaaatactgtataaatattgtctt |
200 |
Q |
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| T |
41505263 |
atgttctttattgtatggataatctcatccgtattcatgggatttaaagaagagaaaatgtctttgaaatagtaggtaaatactgtataaatattgtctt |
41505362 |
T |
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| Q |
201 |
catcgatgatttggattacatcttgattcatgatagaggccatctcattacgcttttatctataagatactttttgatgaaaagtatttggtattcttat |
300 |
Q |
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| T |
41505363 |
catcgttgatttggattccatcttgattcatgatagaggtcatctcattacgcttttttctataagatactttttgatgaaaagtatttgatattcttat |
41505462 |
T |
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| Q |
301 |
ttccttcttggagtcaccttgatccttcgtatggtgtcttgctttgtcgaatgacatgatttagcaacaaaaaga |
375 |
Q |
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| T |
41505463 |
ttccttcttgcagtcaccttgatccttcgtatggtgttttgctttgtcgaatgacatgatttagcaataaaaaga |
41505537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 13275686 - 13275744
Alignment:
| Q |
317 |
ccttgatccttcgtatggtgtcttgctttgtcgaatgacatgatttagcaacaaaaaga |
375 |
Q |
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| T |
13275686 |
ccttaatccttcgtgtggtgtattgctttgccgaattacatgatttagcaataaaaaga |
13275744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 15416915 - 15416960
Alignment:
| Q |
317 |
ccttgatccttcgtatggtgtcttgctttgtcgaatgacatgattt |
362 |
Q |
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| T |
15416915 |
ccttgatccttcatgtggtgtcttgctttgccgaattacatgattt |
15416960 |
T |
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