View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_18 (Length: 368)
Name: NF10559_low_18
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 354
Target Start/End: Original strand, 33498973 - 33499325
Alignment:
| Q |
3 |
tggagaagcataggattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacattattatggcccatgtaagtttcaaaccttctct |
102 |
Q |
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| T |
33498973 |
tggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctct |
33499072 |
T |
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| Q |
103 |
tctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttaca |
202 |
Q |
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| T |
33499073 |
tctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttaca |
33499172 |
T |
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| Q |
203 |
agcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tcctatcggaa |
301 |
Q |
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| T |
33499173 |
agcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttccgatcggaa |
33499272 |
T |
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| Q |
302 |
acagttagaattggccatctttgatggtcctatgagacattttatggtgttta |
354 |
Q |
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| T |
33499273 |
acagttagaattggccatctttgatggtcctatgagacattttatggtgttta |
33499325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 33485762 - 33485867
Alignment:
| Q |
3 |
tggagaagcataggattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacattattatggcccatgtaagtttcaaaccttctct |
102 |
Q |
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| T |
33485762 |
tggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctct |
33485861 |
T |
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| Q |
103 |
tctctt |
108 |
Q |
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| T |
33485862 |
cctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
105 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaag |
204 |
Q |
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||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||| || |||||| || ||| ||||||| |||||| |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
205 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
259 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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