View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_19 (Length: 367)
Name: NF10559_low_19
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 824234 - 824567
Alignment:
| Q |
18 |
aaccaacagcagcagcagcgcagatggatactatcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgc |
117 |
Q |
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| T |
824234 |
aaccaacagcagtagcagcgcagatggatactatcagcaatttacctgacgatatcctctgccacattctctcttttgttcccaccaaaaaaccagttgc |
824333 |
T |
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| Q |
118 |
aacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcatatatgaatca |
217 |
Q |
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| T |
824334 |
aacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctccacaaacttagacttacccaaattgacaagagcatatatgaatca |
824433 |
T |
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| Q |
218 |
atgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacattatgaatagtatgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
824434 |
atgttcatgctcttattttatgtggaaagcattttctacatcagtgtctctccgcatagataaatccacattgtacccaacacattataaatagtatgca |
824533 |
T |
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| Q |
318 |
tgttatctcgatatatgttgaattaacttttcat |
351 |
Q |
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| T |
824534 |
tgttacctcgatatatgttgaattaacttttcat |
824567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 990989 - 990870
Alignment:
| Q |
50 |
atcagcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatc |
149 |
Q |
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| T |
990989 |
atcagcagtttgcccgacgaaatccttttccgcattctctcatttgtatccacaaaagaagcagttgctacaagcgttttgtccaagaggtggactaatc |
990890 |
T |
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| Q |
150 |
tatggcactatgttcccaat |
169 |
Q |
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| T |
990889 |
tctggcattatcttcccaat |
990870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 1013181 - 1013092
Alignment:
| Q |
82 |
cattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatct |
171 |
Q |
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| T |
1013181 |
cattctctcttttctcacaaccaaagaatcagttgcaacaagcattctatcaaagagatggattcacctatggcatcatgttcccaatct |
1013092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 35766297 - 35766399
Alignment:
| Q |
53 |
agcagtttacctgacgatatcctctgccgcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctat |
152 |
Q |
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| T |
35766297 |
agcagtttaccagacgatgttctttgccacattctctcttttgtctccacccaagaggccgttgccacaagcgttttgtccaagagatggactcatcttt |
35766396 |
T |
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| Q |
153 |
ggc |
155 |
Q |
| |
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||| |
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| T |
35766397 |
ggc |
35766399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 22054516 - 22054600
Alignment:
| Q |
81 |
gcattctctcttttgttcccaccaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcc |
165 |
Q |
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||||||||||||| || | |||||| | || |||| |||||| |||||||||| ||||||||||||||||| |||| |||||| |
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| T |
22054516 |
gcattctctctttacttacaaccaaagaggcatttgccacaagtattttgtccaaaagatggactcatctatgtcactttgttcc |
22054600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 40639890 - 40639961
Alignment:
| Q |
101 |
accaaaaaaccagttgcaacaagtgttttgtccaagagatggactcatctatggcactatgttcccaatctc |
172 |
Q |
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| T |
40639890 |
accaaagaatcagttgcaacaagcattctttcaaagagatggattcatctatggcaccatgttcctaatctc |
40639961 |
T |
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