View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10559_low_2 (Length: 486)
Name: NF10559_low_2
Description: NF10559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10559_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 51396907 - 51397168
Alignment:
| Q |
1 |
gaattaactaaaaacagaaatattagcggcacgtcttgaaattaaacacataaacaaaacaagcctatcataagaaaagttaccgctgatatatgacttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51396907 |
gaattaactaaaaacagaaatattagcggcacgtcttgaaattaaacacattagcaaaacaagcctatcataagaaaagttaccgctgatatatgacttg |
51397006 |
T |
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| Q |
101 |
aacatgaattttgatgttaccgattctggctcaggattgctaacagaataaatgtcaattttcttcacctgtaatt---nnnnnnnnnnccacttcaaaa |
197 |
Q |
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| T |
51397007 |
aacatgaattttgatgttaccgattctagctcaggattgctaacagaataaatgtcaattttcttcacctgtaattaaaaaaaaaacaaccacttcaaaa |
51397106 |
T |
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| Q |
198 |
ttatagtgaattgttattacggaggaaaactaaaacacacaacaccattaagatacatatag |
259 |
Q |
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||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
51397107 |
ttatagtaaaatgttattacggaggaaaactaaaacacacgacaccattaagataaatatag |
51397168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 271 - 468
Target Start/End: Original strand, 51397204 - 51397401
Alignment:
| Q |
271 |
aacaaaaataaccagcaactcactttgtcattcagaacgtaaatgtattcatatctgatagtgaacttttgatttcatagatttcaagagagaaactttg |
370 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51397204 |
aacaaaaataactagcaactcactttgtcattcagaacgtaaatgtattcatatctgatagtgaacttttgaattcatagatttcaagagagaaactttg |
51397303 |
T |
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| Q |
371 |
gaaaactaaacacaacactaaagagctgagaaaatatatccaaaacagaattacagaataaaaatgcagagcagcattgtaataccagatccagtccc |
468 |
Q |
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| T |
51397304 |
gaaaactaaacacaacactaaagagctgagaaaatatatccaaaacagaattacagaataaaaatgcagagcagcattgtaataccagatccagtccc |
51397401 |
T |
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